Locus 6634

Sequence ID 2R_DroMel_CAF1
Location 20,726,764 – 20,726,884
Length 120
Max. P 0.676769
window10565

overview

Window 5

Location 20,726,764 – 20,726,884
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.33
Mean single sequence MFE -33.00
Consensus MFE -31.22
Energy contribution -32.02
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.27
Structure conservation index 0.95
SVM decision value 0.30
SVM RNA-class probability 0.676769
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20726764 120 - 20766785
AGGCGCUCGAUAAAAGUAAAAACCAUUUCCGGUAUCAGCGUGGAGUCCAGGCAACUUUCGAUUUCGAUUGUGUAUCAAGGGCAGGGAGAUUUUCUUUAAUUUCCACGUCAAAUCGAGCAC
....(((((((..........(((......)))....(((((((((((..(((.(..(((....)))..)))).....))))..((((.....))))....)))))))...))))))).. ( -35.60)
>DroSec_CAF1 160369 120 - 1
AGGCGCUCGAUAAAAGUAAAAACCAUUUCCGGUAUCAGCGUGGAGUCCAGGCAACUUUCGAUUUCGAUUGUGUAUCAAGGGCAGGGAGAUUUUCUUUAAUUUCCACGUCAAAUCGAGAAC
.....((((((..........(((......)))....(((((((((((..(((.(..(((....)))..)))).....))))..((((.....))))....)))))))...))))))... ( -31.50)
>DroSim_CAF1 165795 120 - 1
AGGCGCUCGAUAAAAGUAAAAACCAUUUCCGGUAUCAGCGUGGAGUCCAGGCAACUUUCGAUUUCGAUUGUGUAUCAAGGGCAGGGAGAUUUUCUUUAAUUUCCACGUCAAAUCGAGCAC
....(((((((..........(((......)))....(((((((((((..(((.(..(((....)))..)))).....))))..((((.....))))....)))))))...))))))).. ( -35.60)
>DroEre_CAF1 200838 120 - 1
AGGCGCUCGAUAAAAGUAAAAACCAUUUCCGGUAUCAGCGUGGAGUCCAGGCAACUUUCGAUUUCGACUGUGUAUCAAGGGCAGGGAGAUUUUCUUUAAUUUCCACAUCAAAUCGAGCAC
....(((((((.(((((....(((......)))....((.(((...))).)).))))).(((.....((((.(.....).))))(((((((......)))))))..)))..))))))).. ( -33.00)
>DroYak_CAF1 166387 120 - 1
AGGCGCUCGAUAAAAGUAAAAACCAUUUCCGGUAUCAGCGUGGAGUCCAGGCAACUUUCGAUUUCGAUUGUGUAUCAAGGGCAGGCAGAUUUUCUUUAAUUUCCACGUCAAAUCGCGCAC
..((((...............(((......)))....(((((((((((..(((.(..(((....)))..)))).....)))).....((((......)))))))))))......)))).. ( -29.30)
>consensus
AGGCGCUCGAUAAAAGUAAAAACCAUUUCCGGUAUCAGCGUGGAGUCCAGGCAACUUUCGAUUUCGAUUGUGUAUCAAGGGCAGGGAGAUUUUCUUUAAUUUCCACGUCAAAUCGAGCAC
....(((((((..........(((......)))....(((((((((((..(((.(..(((....)))..)))).....))))..((((.....))))....)))))))...))))))).. (-31.22 = -32.02 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:46 2006