Locus 662

Sequence ID 2R_DroMel_CAF1
Location 3,295,057 – 3,295,151
Length 94
Max. P 0.519576
window1173

overview

Window 3

Location 3,295,057 – 3,295,151
Length 94
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 88.78
Mean single sequence MFE -24.94
Consensus MFE -18.04
Energy contribution -19.12
Covariance contribution 1.08
Combinations/Pair 1.10
Mean z-score -1.63
Structure conservation index 0.72
SVM decision value -0.03
SVM RNA-class probability 0.519576
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3295057 94 - 20766785
GCUCUAAAAGCUUUUCUUCGCCGAAGGUAGAAAGACAUGGAUGGUUUCGAGUAUUUAAAGAGGGGGAGCUUAGUAUGGUCAGAGAGCG--AGAGAG
(((((..((((((..(((((((...)))..(((.((.((((....)))).)).)))...))))..)))))).(......)..))))).--...... ( -24.00)
>DroSec_CAF1 63365 96 - 1
GCUCUAAAAGCUUUUCUGCGCCGAAGGUAGAAAGACAUGGAUGGUUUCGAAUGUUUGAAGAGGGGGAGCUUAGUGUGGUCAGAGAGCAAGAGAGAG
(((((..((((((..((.(..((((.((.((((..((....)).))))..)).))))..).))..))))))..((....)).)))))......... ( -23.30)
>DroSim_CAF1 75104 96 - 1
GCUCUAAAAGCUUUUCUUCGCCGAAGGUAGAAAGACAUGGAUGGUUUCGAAUGUUUGAAGAGGGGGAGCUUAGUGUGGUCAGAGAGCAAGAGAGAG
(((((..((((((..((((..((((.((.((((..((....)).))))..)).))))..))))..))))))..((....)).)))))......... ( -27.40)
>DroEre_CAF1 62218 93 - 1
GCUCUAAAAGCUUCUCUUCGCCGAAGGUAGAAAGACAUGGUUGUUUCCGUACGUGUGAAGAGGG-GAGCUUAGUAUAGUCAGAAAGCG--AGAGAG
.((((.....(((((((((((((..((.....(((((....)))))))...)).))))))))))-).((((............)))).--)))).. ( -26.40)
>DroYak_CAF1 62370 94 - 1
GCUCUAAAAGCUUUUCUUCACCGAAGGUAGAAAGACAUUGAUGGUUCCGAACGUUUGAAGAGGGAGAGCUUAGUGUGGUCGAAGAACG--AGAGAG
.((((..((((((((((((..((((.((.(((...((....)).)))...)).))))..)))))))))))).......(((.....))--).)))) ( -23.60)
>consensus
GCUCUAAAAGCUUUUCUUCGCCGAAGGUAGAAAGACAUGGAUGGUUUCGAAUGUUUGAAGAGGGGGAGCUUAGUGUGGUCAGAGAGCG__AGAGAG
(((((..((((((((((((..((((.((.((((..((....)).))))..)).))))..)))))))))))).(......)..)))))......... (-18.04 = -19.12 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:02 2006