Locus 659

Sequence ID 2R_DroMel_CAF1
Location 3,284,660 – 3,284,758
Length 98
Max. P 0.728545
window1168

overview

Window 8

Location 3,284,660 – 3,284,758
Length 98
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 81.38
Mean single sequence MFE -25.33
Consensus MFE -18.70
Energy contribution -19.03
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.74
SVM decision value 0.42
SVM RNA-class probability 0.728545
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3284660 98 + 20766785
GCACGCGAA---UGCAUUGCAAGGCAUUUUGUUGCAUUUGCAACAAAGGAAUGCAAGUGGCAGCGACUAACAAGUAAUUUAC-GUACACAAUC--------------GCAACAACA
((.(((...---((((((((...)).(((((((((....))))))))).)))))).))))).((((.......(((...)))-........))--------------))....... ( -25.46)
>DroPse_CAF1 72765 114 + 1
GCACGCGAAUUGUGCAUUGCAAAGCAUUUUGUUGCAUUUGCCACAAAGGAAUGCAAGUGGCAACGUCUAACAAGUAAUUUACCAUACACA--CAGAUACACACAAACACUGCCACG
(((((.....))))).(((((...(.((((((.((....)).)))))))..)))))((((((..(.....)..(((........)))...--.................)))))). ( -25.30)
>DroEre_CAF1 52335 100 + 1
GCACGCGAA---UGCAUUGCAAGGCAUUUUGUUGCAUUUGCAACAAAGGAAUGCAAGUGGCAGCGACUAACAAGUAAUUUAC-GUACACAAACCGAAGCACACA------------
((.(((...---(((.(((((...(.(((((((((....))))))))))..)))))...))))))(((....))).......-..............)).....------------ ( -24.40)
>DroYak_CAF1 52336 111 + 1
GCACGCGAA---UGCAUUGCA-GGCAUUUUGUUGCAUUUGCAACAAAGGAAUGCAAGUGGCAGCGACUAACAAGUAAUUUAC-GUACACAAUCCGAAGCACACACUCACAGCAACG
((.(((...---(((.(((((-..(.(((((((((....))))))))))..)))))...))))))(((....))).......-..............))................. ( -26.80)
>DroAna_CAF1 49719 96 + 1
GCACGCGAA---UGCAUUGCAAGGCAUUUUGUUGCAUUUGCAACAAAGGAAUGCAAGUGGCAGCGGCUAACAAGUAAUUUAC-GUACACAAUCC---------------AACACA-
((.(((...---(((.(((((...(.(((((((((....))))))))))..)))))...))))))))...............-...........---------------......- ( -24.70)
>DroPer_CAF1 81056 114 + 1
GCACGCGAAUUGUGCAUUGCAAAGCAUUUUGUUGCAUUUGCCACAAAGGAAUGCAAGUGGCAACGUCUAACAAGUAAUUUACCAUACACA--CAGAUACACACAAACACUGCCACG
(((((.....))))).(((((...(.((((((.((....)).)))))))..)))))((((((..(.....)..(((........)))...--.................)))))). ( -25.30)
>consensus
GCACGCGAA___UGCAUUGCAAGGCAUUUUGUUGCAUUUGCAACAAAGGAAUGCAAGUGGCAGCGACUAACAAGUAAUUUAC_GUACACAAUCCGA__CACACA___ACAGCAACG
((.(((......((((((((...)).(((((((((....))))))))).)))))).)))))............(((........)))............................. (-18.70 = -19.03 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:55 2006