| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,540,197 – 20,540,287 |
| Length | 90 |
| Max. P | 0.889711 |
| Location | 20,540,197 – 20,540,287 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 74.71 |
| Mean single sequence MFE | -31.27 |
| Consensus MFE | -18.95 |
| Energy contribution | -18.82 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.889711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20540197 90 + 20766785 GA------------CAUCCACGAUGCAGGCGGUGCUCCAAUCUGCGCACAGCAGCAGGCGGCUAAUGCUGUUGCUCUCCAUGCUGCUCAAUGCCGUAAGUCC------ ..------------.......(((...((((((((........))))..(((((((((((((.......)))))).....)))))))...))))....))).------ ( -29.30) >DroVir_CAF1 9169 95 + 1 -U------------CGAGCACAAUGCAGUCCGUGCACAAAACUGCACACAGGAGCAAGUGGUUCCUGCUGCUGCUCUCCAUGCUGCUGAAUGCGGUAAGUAAUACGCU -.------------.(((((....((((...(((((......))))).(((((((.....))))))))))))))))....((((((.....))))))........... ( -34.90) >DroPse_CAF1 7925 90 + 1 GC------------CAGACACAAUGCAGGCGGUGCACAAAACUGCACACAGCAGCAAAUGGCUGAUACUGUUGCUCUCAAUGCUGCUCAAUGCCGUAAGUCC------ ..------------..(((....(((.(((((((((......)))))..(((((((...(((..........))).....)))))))...))))))).))).------ ( -25.50) >DroMoj_CAF1 8667 91 + 1 -C------------CGAGCACAAUGCAGGCCGUGCACACAAAUGCACAGAGGAGCCAGUGGCUACUGCUGCUCUUCGCCAUGCUGCUGAAUGCGGUAAGUACAA---- -.------------...((.....)).(((.(((((......))))).(((((((.((..(...)..)))))))))))).((((((.....)))))).......---- ( -34.50) >DroAna_CAF1 5097 101 + 1 GAGCGUACAGCCAGGAGCCAGGAUGCAGGCGGUGCACAAAUCUGCACACCACAGCAAGCGGCUGUUGUUGCUGCUCUCCAUGCUGCUCAAUGCCGUAAGUC------- ..((.(((.((...((((.((.(((.(((..(((((......)))))..)..((((.(((((....))))))))))).))).))))))...)).))).)).------- ( -34.10) >DroPer_CAF1 6040 90 + 1 GC------------CAGACACAAUGCAGGCGGUGCACAAAACUGCACACAGCAGCAAAUGGCUGAUACUGUUGCUCUCAAUGCUGCUGAAUGCCGUAAGUCC------ ..------------..(((....(((.(((((((((......))))).((((((((...(((..........))).....))))))))..))))))).))).------ ( -29.30) >consensus GC____________CAGACACAAUGCAGGCGGUGCACAAAACUGCACACAGCAGCAAGUGGCUGAUGCUGCUGCUCUCCAUGCUGCUCAAUGCCGUAAGUCC______ ........................((..((((((((......)))))..(((((((((((((....))))))........)))))))......)))..))........ (-18.95 = -18.82 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:07 2006