Locus 6570

Sequence ID 2R_DroMel_CAF1
Location 20,529,341 – 20,529,440
Length 99
Max. P 0.906561
window10457

overview

Window 7

Location 20,529,341 – 20,529,440
Length 99
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 73.19
Mean single sequence MFE -22.24
Consensus MFE -7.48
Energy contribution -7.80
Covariance contribution 0.32
Combinations/Pair 1.13
Mean z-score -2.00
Structure conservation index 0.34
SVM decision value 1.05
SVM RNA-class probability 0.906561
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20529341 99 + 20766785
AAAGGUGGCUAGC------GGCCACGCUUGAAAGUGACAAAUACAUAUGUACACUUUCUUACUAGG--CACUAA-AAUACUUAAAAAAACUAAAAAACGCGGCUCAAA
...((((.(((((------(....)))..((((((((((........))).)))))))....))).--))))..-................................. ( -21.60)
>DroSec_CAF1 30984 86 + 1
AAAGUGGGCUAGC------GGCCACCCUUGAAAGUGACAAAU----AUGGACACUUUCUUGCUGGG--CACUAA----------AAAAACUGAAAAACGCGGCUCAAA
....((((((.((------((((...(..(((((((.((...----.))..)))))))..)...))--).....----------......(....).))))))))).. ( -24.30)
>DroSim_CAF1 31072 86 + 1
AAAGUGGGCUAGC------GGCCACCCUUGAAAGUGACAAAU----AUGGACACUUUCUUGCUGGG--CACUAA----------AAAAACUUAAAAACGGGGCUCAAA
....((((((..(------((((...(..(((((((.((...----.))..)))))))..)...))--)..(((----------......)))....)).)))))).. ( -21.70)
>DroEre_CAF1 31793 102 + 1
AAAAUGAGUUUGUGGGGACGGGGACACUUGAAAGUGACAAAU----AUGGAAACUUCC-AACUAAAUUCACUACAAAUUCUUA-AAAGUCUGGGAAACGCGGCUCAAA
.....(((((((((((((...((.((((....))))......----.((((....)))-).))...))).))))))))))...-..((.((((....).))))).... ( -24.10)
>DroYak_CAF1 31706 96 + 1
AAAAUGAGUUUGC------GGCGACCCUUGCAAGUGACAAAU----AUGGAAACUUCC-AACUAAGUUCACUACAAAUUCUUU-GAAGGCUGAAACACGCGGCUCAAA
....((((((.((------(((((...)))).(((((.....----.((((....)))-).......)))))...........-.............))))))))).. ( -19.52)
>consensus
AAAGUGGGCUAGC______GGCCACCCUUGAAAGUGACAAAU____AUGGACACUUUCUUACUAGG__CACUAA_AAU_CUU__AAAAACUGAAAAACGCGGCUCAAA
....((((((.........(....)....((((((..((........))...))))))..........................................)))))).. ( -7.48 =  -7.80 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:02 2006