Locus 656

Sequence ID 2R_DroMel_CAF1
Location 3,271,839 – 3,271,932
Length 93
Max. P 0.888709
window1164

overview

Window 4

Location 3,271,839 – 3,271,932
Length 93
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 77.79
Mean single sequence MFE -19.30
Consensus MFE -6.76
Energy contribution -7.68
Covariance contribution 0.92
Combinations/Pair 1.15
Mean z-score -2.21
Structure conservation index 0.35
SVM decision value 0.95
SVM RNA-class probability 0.888709
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3271839 93 + 20766785
-CUAAUUAAAUUUAAAAUUAAUCAGCGGCAUUUCGGUACAUGCAACGCAUAUGAAUUCAAAUGGAUUUAAGCCGCUGUGCUUAAAUGUUUUAAA
-.........((((((((....(((((((..........((((...)))).(((((((....))))))).))))))).........)))))))) ( -21.72)
>DroSec_CAF1 40562 93 + 1
-CUAAAUCAAUUAAGAAUUAAUCAGCGGCAGUUCGAUGCAUGCUAAGCAUAUGAAUUCACAUGGAUUUAAAACGCUGUGCUUAAAUGUUUUAAA
-.((((.((.(((((.......((((((((......)))((((...)))).(((((((....)))))))...)))))..))))).)).)))).. ( -20.00)
>DroSim_CAF1 51764 93 + 1
-CUAAAUCAAUUAAGAAUUAAUCAGCGGCAGUUCGAUGCAUGCUAAGCAUAUGAAUUCAAAUGGAUUUAAGCCGCUGCGUUUAAAUGUUUUAAA
-.........((((((.((((.(((((((......((((.......)))).(((((((....))))))).)))))))...))))...)))))). ( -23.70)
>DroEre_CAF1 39771 83 + 1
AAGAAAUCAAUUUAGAAUUAAUGAGCGGCAAUUCGGUGCAUGCUAAACAUAUGAAUUCAAGUGAAUUUAAACUG-----------AGUUUCGAA
..(((((((.((((((.......(((((((......))).))))...(((.((....)).)))..)))))).))-----------).))))... ( -15.40)
>DroYak_CAF1 39799 78 + 1
-UCAAAUCAAUUAAGAAUUAAUGAGCGGCAUUUCGCU----GCUAAACGUAUGAAUUCAAAUGGAUUUAAACUG-----------UGUUUUAAA
-.........((((((.......((((((.....)))----)))....((.(((((((....))))))).))..-----------..)))))). ( -15.70)
>consensus
_CUAAAUCAAUUAAGAAUUAAUCAGCGGCAGUUCGAUGCAUGCUAAGCAUAUGAAUUCAAAUGGAUUUAAACCGCUG_G_UUAAAUGUUUUAAA
..........((((((.......(((((((......))).)))).......(((((((....)))))))..................)))))). ( -6.76 =  -7.68 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:51 2006