| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,501,340 – 20,501,452 |
| Length | 112 |
| Max. P | 0.515487 |
| Location | 20,501,340 – 20,501,452 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 82.62 |
| Mean single sequence MFE | -41.68 |
| Consensus MFE | -24.88 |
| Energy contribution | -23.88 |
| Covariance contribution | -1.00 |
| Combinations/Pair | 1.46 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.60 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.515487 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20501340 112 + 20766785 CUUCCAACAGCUGCUGGGCUUCAGUAAGCUGUGAUUCCAUGUUGCUUGCAGACUUUACGGCGGCCGAGGCUUUUAGUUCGGCUUCCUCCAGCUGGUUUGUUAUGUUCUCAGC .....(((((((((((((.....((((((.(((....)))...)))))).........((.(((((((.(.....)))))))).)))))))).)).)))))........... ( -33.80) >DroGri_CAF1 3047 112 + 1 CCUCAAGCAGCUGUUGCGCCUCCGUCAGCUGUGAUUCCAUAUUGCUGGCGGAUUUGACAGCAGCGGAUGCCUUCAGUUCGGCCUCCUCCAGCUGAUUGGUAAUAUUUUCGGC ((...(((.(((((((((..(((((((((((((....))))..)))))))))..)).)))))))(((.(((........))).)))....)))....))............. ( -44.00) >DroWil_CAF1 2754 112 + 1 CUUCGAGAAGUUGUUGGGCUUCCGUUAGCUGGGAUUCCAUAUUGCUGGCUGAUUUCACUGCAGCGGAGGCCUUUAGUUCGGCCUCUUCCAGUUGAUUUGUUAUAUUCUCCGC ....(((((......((....))(((((((((((........(((((..((....))...)))))((((((........)))))))))))))))))........)))))... ( -34.70) >DroMoj_CAF1 3106 112 + 1 CCUCCAGCAGCUGCUGUGCCUCUGUCAGCUGCGAUUCCAUAUUGCUGGCUGACUUGACGGCCGCCGAGGCCUUCAGUUCGGCCUCCUCCAGCUGGUUGGUAAUGUUCUCCGC ...((((((((((..(.(((((.((((((((((((.....))))).)))))))..)).))))...((((((........))))))...))))).)))))............. ( -46.40) >DroAna_CAF1 2586 112 + 1 CCUCGAGCAGUUGCUGGGCUUCGGUCAGCUGCGACUCCAUGUUGCUGGCCGACUUGACGGCCGCGGAGGCCUUCAACUCAGCCUCCUCCAGCUGGUUGGUGAUGUUCUCGGC ..(((((..((..(.(((((((.((.....(((((.....))))).(((((......))))))).))))))).((((.((((........)))))))))..))...))))). ( -46.20) >DroPer_CAF1 2730 112 + 1 CCUCCAGCUGCUGCUGCGCUUCCGUCAGCUGCGACUCCAUGUUGCUGGCCGACUUGACGGCUGCCGAUGCCUUCAGCUCGGCCUCCUCCAGCUGAUUGGUGAUAUUCUCCGC ....((((....))))((((...((((((((((((.....))))).((((((.((((.(((.......))).)))).))))))......))))))).))))........... ( -45.00) >consensus CCUCCAGCAGCUGCUGGGCUUCCGUCAGCUGCGAUUCCAUAUUGCUGGCCGACUUGACGGCAGCCGAGGCCUUCAGUUCGGCCUCCUCCAGCUGAUUGGUAAUAUUCUCCGC .......(((((((((((..((.((((((...(((.....))))))))).))..)).))))....((((((........))))))....))))).................. (-24.88 = -23.88 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:40 2006