| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,484,955 – 20,485,065 |
| Length | 110 |
| Max. P | 0.592749 |
| Location | 20,484,955 – 20,485,065 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.72 |
| Mean single sequence MFE | -34.12 |
| Consensus MFE | -22.79 |
| Energy contribution | -21.47 |
| Covariance contribution | -1.33 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.592749 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20484955 110 - 20766785 --CG--------CAGAAAAUGGGAACUACCUUGAGAGUACGCGCCCGUAUCCAGAUCAAUUUGGCCGUUAGCCAAGUGUUUGACAUCAAGCAGGUAGCCAACUUCCCGGACAUCAUCUUU --..--------..((...((((((((((((...(..((((....))))..)......(((((((.....)))))))(((((....))))))))))).....))))))....))...... ( -29.40) >DroVir_CAF1 18100 120 - 1 CCUCCAACCGUCUAGAAAAUGGGCACCACUUUGAGCGUACGCGCCCGCAUCCAGAUCAAUUUGGCUGUCAGCCAAGUGUUUGACAUCAAGCAGGUGGCCAAUUUUCCGGACAUCAUAUUC .........(((..((((((((.((((..((((((((....))).......(((((..(((((((.....))))))))))))...)))))..)))).)).))))))..)))......... ( -39.50) >DroGri_CAF1 11278 110 - 1 --UU--------UAGAAAAUGGGCACCACACUGCGUGUGCGGGCUCGCAUCCAGAUCAACUUGGCCGUCAGUCAGGUGUUUGACAUCAAGCAGGUGGCCAAUUUCCCGGACAUCAUCUUC --..--------..((((.(((.((((...(((.(.(((((....)))))))))....(((((((.....)))))))(((((....))))).)))).))).))))............... ( -34.60) >DroWil_CAF1 13997 110 - 1 --UA--------CAGAAAAUGGGAACCACAUUACGCGUGCGGGCACGUAUCCAAAUCAACUUGGCCGUCAGCCAGGUCUUUGACAUCAAACAGGUGGCCAAUUUCCCAGAUAUUAUAUUC --..--------.......((((((((((.....(((((....)))))...((((...(((((((.....))))))).))))...........)))).....))))))............ ( -29.60) >DroMoj_CAF1 12249 112 - 1 UCUUC--------AGACAACGGGCACCACUCUGCGUGUGAGCGCUCGCAUCCAGAUCAACUUGGCCGUCAGCCAGGUGUUCGACAUCAAGCAGGUGGCCAAUUUCCCGGAUAUUAUUUUC .....--------......((((......((((.((((((....)))))).)))).....((((((..(.((..((((.....))))..)).)..))))))...))))............ ( -35.80) >DroAna_CAF1 8971 110 - 1 --CA--------CAGAAAAUGGGAACCACGCUGCGAGUGCGCGCCCGCAUCCAAAUUAAUCUGGCCGUGAGCCAGGUGUUCGACAUCAAGCAGGUGGCCAACUUCCCGGACAUCAUCUUC --..--------..((...((((((((((.(((((..((((....))))..)......((((((.(....)))))))............)))))))).....))))))....))...... ( -35.80) >consensus __UA________CAGAAAAUGGGAACCACACUGCGAGUGCGCGCCCGCAUCCAGAUCAACUUGGCCGUCAGCCAGGUGUUUGACAUCAAGCAGGUGGCCAAUUUCCCGGACAUCAUCUUC ..............((...((((..((((..((((.((....)).)))).........(((((((.....)))))))(((((....)))))..)))).......))))....))...... (-22.79 = -21.47 + -1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:36 2006