Locus 6545

Sequence ID 2R_DroMel_CAF1
Location 20,458,189 – 20,458,300
Length 111
Max. P 0.861607
window10423

overview

Window 3

Location 20,458,189 – 20,458,300
Length 111
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.35
Mean single sequence MFE -30.43
Consensus MFE -18.79
Energy contribution -19.10
Covariance contribution 0.31
Combinations/Pair 1.39
Mean z-score -2.24
Structure conservation index 0.62
SVM decision value 0.83
SVM RNA-class probability 0.861607
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20458189 111 + 20766785
ACAGAUGGCACAUCGCCAUGCGCCGCCAGCAACUACAAUCCA------CCUGAGUACUACAUUAACAUGCGCUCGGGAACCCACUAUUUCCCGAAGAG---CGUCAACUCGCUGGCCGUC
....(((((.....)))))..((.((((((.(((.((.....------..))))).............(((((((((((........)))))...)))---)))......)))))).)). ( -34.10)
>DroVir_CAF1 1000 120 + 1
ACCGACGGCAAUUCUCCGUGCGCCGCCAGCAGCGCCAAUCCGCCGGCGCCGGAGUACUACAUCAACAUGCGCAGCGGCACGCAUUACUUUCCCAGUCGAUCCGUUAACUCGUUGGCCAUU
.((((((((....(((((.((((((......(((......)))))))))))))).....(((....))).))(((((..((.(((........)))))..)))))....))))))..... ( -36.50)
>DroPse_CAF1 1006 111 + 1
ACAGAUGGCACCUCUCCAUGCGCCGCCAGCAACUACAAUCCC------CCCGAGUACUAUAUAAACAUGCGCUCGGGUACCCACUACUUUCCCAAGAG---CAUCAACUCGCUGGCCAUC
...(((((((........)))...((((((............------((((((..(...........)..))))))..................(((---......))))))))))))) ( -31.10)
>DroWil_CAF1 1045 111 + 1
ACUGAUGGCACCUCACCCUGUGCGGCCAGCAAUUAUAAUCCU------CCCGAGUAUUACAUCAAUAUGCGUACGGGUACACAUUAUUUCCCCAAGAG---UGUCAAUUCGUUGGCCAUC
.......((((........))))(((((((....(((((...------((((.((((.........))))...)))).....)))))........(((---(....)))))))))))... ( -28.60)
>DroAna_CAF1 1032 111 + 1
ACAGACGGCACCUCUCCCUGCGCUGCCACCAACUACAAUCCC------CCUGAAUACUACAUCAACAUGCGCUCGGGUACGCACUACUUCCCCAAGAG---CGUAAACUCAUUGGCCAUC
......((((.(.(.....).).)))).((((..........------..(((........)))...((((((((((............)))...)))---))))......))))..... ( -21.20)
>DroPer_CAF1 1678 111 + 1
ACAGAUGGCACCUCUCCAUGCGCCGCCAGCAACUACAAUCCC------CCCGAGUACUAUAUAAACAUGCGCUCGGGUACCCACUACUUUCCCAAGAG---CAUCAACUCGCUGGCCAUC
...(((((((........)))...((((((............------((((((..(...........)..))))))..................(((---......))))))))))))) ( -31.10)
>consensus
ACAGAUGGCACCUCUCCAUGCGCCGCCAGCAACUACAAUCCC______CCCGAGUACUACAUCAACAUGCGCUCGGGUACCCACUACUUCCCCAAGAG___CGUCAACUCGCUGGCCAUC
...(((((((........)))...((((((..................((((((..(...........)..))))))..................(((.........))))))))))))) (-18.79 = -19.10 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:29 2006