| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,251,405 – 3,251,510 |
| Length | 105 |
| Max. P | 0.821034 |
| Location | 3,251,405 – 3,251,510 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 76.96 |
| Mean single sequence MFE | -29.22 |
| Consensus MFE | -22.53 |
| Energy contribution | -22.78 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.821034 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3251405 105 - 20766785 GGCUCGGCGCCCAGUAUGUUUCUGCUGGGCGAGGACUCCUACCUCAAUGUUACCGAACAACA------GGAGCAGCACCAGCACCAGCAUCAGCACCAUAAUCACCAGUUU .....((.((...(.(((((..((((((((((((.......))))..((((.((........------)))))))).))))))..)))))).)).)).............. ( -31.30) >DroSec_CAF1 20371 108 - 1 GGCUCGGCGCCCAGUAUGUUUCUGCUGGGCGAGGACUCCUACCUCAAUGUAACCGAACAGCA---GCAGGAGCAGCACCAGCAGCACCACCACCACCAUAAUCACCAGUUU ((.((((.((((((((......))))))))((((.......)))).......))))......---...((.((.((....)).)).)).)).................... ( -32.10) >DroSim_CAF1 27195 102 - 1 GGCUCGGCGCCCAGUAUGUUUCUGCUGGGCGAGGACUCCUACCUCAAUGUAACCGAACAGCA---GCAGGAGCAGCACCAGC------ACCAUCACCAUAAUCACCAGUUU .((((.((((((((((......))))))))((((.......)))).................---))..)))).((....))------....................... ( -30.30) >DroEre_CAF1 20122 87 - 1 GGCUCGGCGCCCAGUAUGUUCCUGCUGGGCGAGGAUUCCUACCUCAAUGUUACCGAACAGCA------GGAGCAGCA------------------UCACAAUCAUCAGUUU .((((.((((((((((......))))))))((((.......))))..((((....)))))).------.))))....------------------................ ( -29.50) >DroYak_CAF1 20415 87 - 1 GGCUCGGCGCCCAGUAUGUUUCUGCUGGGAAAGGAUUCCUACCUCAAUGUUACCGAACAGCA------GGAGCAGCA------------------CCAUAAUCAUCAGUUU (((.....)))..((.(((((((((((((((....))))))......((((....)))))))------)))))))).------------------................ ( -22.20) >DroPer_CAF1 46150 93 - 1 GGAUCGCCGCCCAGUAUGCUGCUGCUGGGCGAGAACUCCUAUCUCAAUGUAACCGAGAACCAGGACUAGGGGAAGGAUC------------------UACAGCAGCAUUUU (((((..(((((((((......)))))))))....((((((((((.........))))........))))))...))))------------------)............. ( -29.90) >consensus GGCUCGGCGCCCAGUAUGUUUCUGCUGGGCGAGGACUCCUACCUCAAUGUAACCGAACAGCA______GGAGCAGCACC________________CCAUAAUCACCAGUUU .((((...((((((((......))))))))((((.......))))........................))))...................................... (-22.53 = -22.78 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:47 2006