| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,372,295 – 20,372,393 |
| Length | 98 |
| Max. P | 0.553661 |
| Location | 20,372,295 – 20,372,393 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 78.22 |
| Mean single sequence MFE | -24.62 |
| Consensus MFE | -14.20 |
| Energy contribution | -15.20 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.553661 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20372295 98 + 20766785 AUGCAAGGCGCGAAUUGUAAAUUUGCAAAUGCCGGAAACGCAAAUUUU-CCAAACUUGUUAGCCAGCCCAAACUGCCAUGGCGGC-----AGUGGGCCCACAAC--- ......(((((((((.....))))))...(((.(....))))......-............))).((((..((((((.....)))-----))))))).......--- ( -31.90) >DroVir_CAF1 119884 79 + 1 AUGCAAGGCGCGAAUUGUAAAUUUGCAAAUGCCGGAAACGCAAAUUUUACCAAACUUGUUACCCACCCACAG-------------------------CAACGAC--- ..(((((..((((((.....))))))...(((.(....))))............))))).............-------------------------.......--- ( -13.90) >DroSim_CAF1 94333 98 + 1 AUGCAAGGCGCGAAUUGUAAAUUUGCAAAUGCCGGAAACGCAAAUUUU-CCAAACUUGUUAGCCAGCCCAAACUGCCAUGGCCGC-----AGCGGGCCCACAAC--- ......(((((((((.....))))))...(((.(....))))......-............))).((((...((((.......))-----)).)))).......--- ( -26.10) >DroEre_CAF1 96340 91 + 1 AUGCAAGGCGCGAAUUGUAAAU-UGCAAAUGCCGGAAACGCAAAUUUU-CCAAACUUGUUAGCCAGC-C-----GCCAUGGCGGC-----AGUGGGACCACAAC--- ......(((((((........)-)))...(((.(....))))......-............))).((-(-----((....)))))-----.(((....)))...--- ( -28.40) >DroYak_CAF1 92125 78 + 1 AUGCAAGGCGCGAAUUGUAAAUUUGCAAAUGCCGGAAACGCAAAUU-U-CCAAACUUGUUAGCCAGCCC-----GCCAUGGCGGC---------------------- ......(((((((((.....))))))...(((.(....))))....-.-............)))...((-----((....)))).---------------------- ( -22.30) >DroAna_CAF1 88240 99 + 1 AUGCAAGGCGCGAAUUGUAAAUUUGCAAAUGCCGGAAACGCAAAUUUU-CCAAACUUGUUACCCA-------CAGCCAUGGCGGCUCGACAGUCAGUCCCCAGCCAU ..((..(((((((((.....))))))...(((.(....))))......-................-------..)))...))((((.(((.....)))...)))).. ( -25.10) >consensus AUGCAAGGCGCGAAUUGUAAAUUUGCAAAUGCCGGAAACGCAAAUUUU_CCAAACUUGUUAGCCAGCCC_____GCCAUGGCGGC_____AGUGGG_CCACAAC___ ..(((((..((((((.....))))))...(((.(....))))............)))))..((((.............))))......................... (-14.20 = -15.20 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:44 2006