| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,371,096 – 20,371,196 |
| Length | 100 |
| Max. P | 0.829541 |
| Location | 20,371,096 – 20,371,196 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 76.13 |
| Mean single sequence MFE | -32.48 |
| Consensus MFE | -18.04 |
| Energy contribution | -18.79 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.829541 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20371096 100 + 20766785 CAUGGGCUUCUGGCCAUG-------GGCCAUG--GGCCGCUCCUUUUGGCCA-CAUGCGAAAUGCGUGUAAUUAGCCGAAGCAUUUCAAAUUGCAAAGUGCAACGCGGCA- (((((.(....).)))))-------(((((.(--((.....)))..)))))(-(((((.....)))))).....((((..((((((.........))))))....)))).- ( -37.60) >DroVir_CAF1 118467 92 + 1 CACG--------------GAUUG--CGGCAUGG-GGGCACUCCUUUUGGCCA-AAUGCGAAAUGCGUGUAAUUAGCCGCAGCGUUUCAAAUUGCAAGCCGCCAACUGGCU- ...(--------------(.(((--((((((..-((.((.......)).)).-.))))((((((((((........))).)))))))....))))).))(((....))).- ( -32.70) >DroGri_CAF1 111239 91 + 1 CACG--------------GAUUG--CGGCC----GGGCACUCCUUUUGGCCAGUAGGCGAAAUGCGUGUAAUUAGCCGCAGCGUUUCAAAUUGCAAACUGCCAACCGGCUA ..((--------------(..((--((((.----.(((((.(..(((.(((....))).))).).))))..)..))))))(((........)))..........))).... ( -29.00) >DroSec_CAF1 87806 82 + 1 -------------------------GGCCAUG--GGCCGCGCCUUUUGGCCA-CAUGCGAAAUGCGUGUAAUUAGCCGGAGCAUUUCAAAUUGCAAAGUGCAACGCGGCA- -------------------------(((((.(--(((...))))..)))))(-(((((.....)))))).....(((((.((((((.........))))))..).)))).- ( -30.90) >DroSim_CAF1 93130 82 + 1 -------------------------GGCCAUG--GGCCGCUCCUUUUGGCCA-CAUGCGAAAUGCGUGUAAUUAGCCGGAGCAUUUCAAAUUGCAAAGUGCAACGCGGCA- -------------------------.((((((--(((((.......))))).-)))(((((((((..((.....))....)))))))...((((.....)))).))))).- ( -28.40) >DroYak_CAF1 90837 95 + 1 CA--------------GGGGCUGCUGGCCAUGCUGGCCGCUCCUUUUGGCCA-CAUGCGAAAUGCGUGUAAUUAGACGAGGCAUUUCAAAUUGCAAAGUGCAACGCGGCA- .(--------------(((((.((..((...))..)).))))))....(((.-(....(((((((.(((......)))..)))))))...((((.....)))).).))).- ( -36.30) >consensus CA_______________________GGCCAUG__GGCCGCUCCUUUUGGCCA_CAUGCGAAAUGCGUGUAAUUAGCCGAAGCAUUUCAAAUUGCAAAGUGCAACGCGGCA_ ..........................(((.....(((((.......))))).....(((((((((...............)))))))...((((.....)))).))))).. (-18.04 = -18.79 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:43 2006