Locus 6500

Sequence ID 2R_DroMel_CAF1
Location 20,317,143 – 20,317,249
Length 106
Max. P 0.697573
window10354

overview

Window 4

Location 20,317,143 – 20,317,249
Length 106
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 81.21
Mean single sequence MFE -38.88
Consensus MFE -26.44
Energy contribution -26.58
Covariance contribution 0.14
Combinations/Pair 1.28
Mean z-score -1.67
Structure conservation index 0.68
SVM decision value 0.34
SVM RNA-class probability 0.697573
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20317143 106 - 20766785
UGGAGCAGCUUCACCAGCAGGAGCAGGAAGAGGCUUUCUAGGAGGGCGCACCACCAGGGAAGCUUGAGCCUCUUGGCUGUGACACUUUGCAAAGGGUGGUGGGCUA
(((((.((((((.((.((....)).))..)))))))))))....(((.(((((((.(.((((....((((....))))......)))).)....))))))).))). ( -40.80)
>DroPse_CAF1 40918 97 - 1
UGGAGCAGCUUCAUCAGCAGCAGCAUAAAGAGGUUCUCCAGGAGCGGACACCACCAAGGCAUCUGCAGCCGAUUGGCGGUGAAACUCUGCAAGGAAU---------
(((((.((((((....((....)).....)))))))))))...(((((((((.(((.(((.......)))...))).))))....))))).......--------- ( -33.90)
>DroSec_CAF1 33880 106 - 1
UGGAGCAGCUUCACCAGCAGGAGCAGGAAGAGGCUUUCCAGGAGGGCGCACCACCAGGGAAGCUUGAGCCUCUUGGCUGUGACACUUUGCAAAGGGUGGUGGGCUA
(((((.((((((.((.((....)).))..)))))))))))....(((.(((((((.(.((((....((((....))))......)))).)....))))))).))). ( -43.10)
>DroEre_CAF1 34249 106 - 1
UGGAGCAGCUUCACCAGCAGGAGCAGGAAGAGGCUUUCUGAGAGCGCGCACCACCAGGUAAGCUGGAGCCUCUUGGCGGUAACACUCUGCAAAGGGUGGUGCGACA
.((((.((((((.((.((....)).))..))))))))))....(((((((((.((((.....)))).(((....))))))..((((((....))))))))))).). ( -42.00)
>DroYak_CAF1 34410 106 - 1
UGGAGCAGCUUCACCAGCAGGAGCAGGAAGAGGCUUUCCAGGAGGGCGCACCACCAGGGCAGCUGGAGCCUCUUGGCGGUAACACUUUGCAAGGGGUGUUGCGAUA
(((((.((((((.((.((....)).))..)))))))))))......((((((.((((.....)))).(((....))))))((((((((....)))))))))))... ( -39.60)
>DroPer_CAF1 40650 97 - 1
UGGAGCAGCUUCAUCAGCAGCAGCAUAAAGAGGUUCUCCAGGAGCGGACACCACCAAGGCAUCUGCAGCCGAUUGGCGGUGAAACUCUGCAAGGAAU---------
(((((.((((((....((....)).....)))))))))))...(((((((((.(((.(((.......)))...))).))))....))))).......--------- ( -33.90)
>consensus
UGGAGCAGCUUCACCAGCAGGAGCAGGAAGAGGCUUUCCAGGAGCGCGCACCACCAGGGAAGCUGGAGCCUCUUGGCGGUGACACUCUGCAAAGGGUGGUG_G_UA
(((((.((((((.((.((....)).))..)))))))))))........((((.(((((...((....))..))))).)))).((((((....))))))........ (-26.44 = -26.58 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:22 2006