Locus 650

Sequence ID 2R_DroMel_CAF1
Location 3,235,806 – 3,235,913
Length 107
Max. P 0.500000
window1153

overview

Window 3

Location 3,235,806 – 3,235,913
Length 107
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 87.23
Mean single sequence MFE -39.26
Consensus MFE -31.26
Energy contribution -31.62
Covariance contribution 0.36
Combinations/Pair 1.10
Mean z-score -1.42
Structure conservation index 0.80
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3235806 107 - 20766785
GUCGUUCGCC--UUUUUUUGUGUGUGCGUGCGAGGGGAAUGCACCCCACUGUGCAGGCGCCUCUUCU----------CGAUUAAAUUCUGUCUGAGGUCAUCGAGGCACAUGCAGAAAA
..........--.((((((((((((((....((((.(..(((((......)))))..).))))..((----------((((....(((.....)))...)))))))))))))))))))) ( -41.80)
>DroSec_CAF1 4977 109 - 1
GUCACUCGCCGCCUGUUUUGUGUGUGCGUGCGAGGGGAAUGCACCCCACUGUGCAGGCGCCUCUUCU----------CGAUUAAAUUCAGUCUGAGGUCAUCGAGGCACAUGCAGAAAA
...............((((((((((((....((((.(..(((((......)))))..).))))..((----------((((....(((.....)))...)))))))))))))))))).. ( -40.60)
>DroSim_CAF1 8154 109 - 1
GUCACUCGCCGCCUGUUUUGUGUGUGCGUGCGAGGGGAAUGCACCCCACUGUGCAGGCGCCUCUUCU----------CGAUUAAAUUCAGUCUGAGGUCAUCGAGGCACAUGCAGAAAA
...............((((((((((((....((((.(..(((((......)))))..).))))..((----------((((....(((.....)))...)))))))))))))))))).. ( -40.60)
>DroEre_CAF1 4722 114 - 1
GUCACUCGCC-----UUUUUUGUGUGCGUGCGGGGGGAAUGCACCCCACUGUGCAGGCGCCUCUUCUCUUGCGCGUUCAAUUUAAUUCAGUCUGAGGUCAUUCCGGCACAUGCAGAAAA
..........-----.((((((((((((((((((((((.(((((......)))))(....)..))))))))))))..............(((.(((....))).))).)))))))))). ( -33.30)
>DroYak_CAF1 4798 114 - 1
GUCACUCGCC-----UUUUUUGUGUGCGUGCGGGGGGAAUGCACCCCACUGUGCAGGCGCCUCUUCUCUGGCGCGUUCAAUUAAACUCAGUCUGAGGUCAUCCAGGCACAUGCAGAAAA
..........-----.((((((((((.(..(((((((......)))).)))..)..(((((........)))))...............(((((........))))).)))))))))). ( -40.00)
>consensus
GUCACUCGCC___U_UUUUGUGUGUGCGUGCGAGGGGAAUGCACCCCACUGUGCAGGCGCCUCUUCU__________CGAUUAAAUUCAGUCUGAGGUCAUCGAGGCACAUGCAGAAAA
...............((((((((((((....((((.(..(((((......)))))..).))))..............((((....(((.....)))...))))..)))))))))))).. (-31.26 = -31.62 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:40 2006