Locus 649

Sequence ID 2R_DroMel_CAF1
Location 3,234,834 – 3,234,939
Length 105
Max. P 0.962177
window1152

overview

Window 2

Location 3,234,834 – 3,234,939
Length 105
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 76.86
Mean single sequence MFE -26.46
Consensus MFE -13.94
Energy contribution -15.22
Covariance contribution 1.28
Combinations/Pair 1.20
Mean z-score -2.27
Structure conservation index 0.53
SVM decision value 1.54
SVM RNA-class probability 0.962177
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3234834 105 - 20766785
AAAGGAGAGAGUGACCCUACACUCUCUCCCGAGCAACGUACACUGUCAGAAAAGGCCAUCUUGAUACCAAAUGCGCAGGUCAAACUAGGUAGCUCAUUUGCC-UUG
...((((((((((......)))))))))).((((.((.((....((..((....(((((.(((....)))))).))...))..)))).)).)))).......-... ( -30.90)
>DroSec_CAF1 4018 105 - 1
AAAUGAGAGAGUGACCCCAUACUCUCUCCCGAGCAACGUACACUGGCAGAAAAAGCCAGCUUGAUACCAAAUGCGCAGGUCAAACUAGGCAACUCAUUUGCC-UUU
....(((((((((......)))))))))((..(((..((((((((((.......)))))..)).)))....)))...)).......((((((.....)))))-).. ( -31.20)
>DroSim_CAF1 7225 105 - 1
AAAUGAGAGAGUGACCCCAUACUCUCUCCCGAGCAACAUACACUGGCAGAAAAAGCCAGCUUGAUACCAAAUGCGCAGGUCAAACUAGGCAACUCAUUUGCC-UUU
....(((((((((......)))))))))((..(((.......(((((.......))))).(((....))).)))...)).......((((((.....)))))-).. ( -30.40)
>DroEre_CAF1 3793 84 - 1
AAUUGAGAACGUU----CCAACUCUCUCCCGAGCAGCGUACACUGGUAGAA-AAGCCAGCUUGAUAUCAAAUGCGCAAGUCAAACG-----------------UUU
......(((((((----...((((((....)))..(((((..(((((....-..))))).(((....))).))))).)))..))))-----------------))) ( -19.20)
>DroYak_CAF1 3866 100 - 1
AAGUGAGAG--AA----CACACUCUCUCGCAAGCAAAUUACACUGAUAGAAAAAGCGAGUUUGAUACUAAAUGCGCAGGUCAAACACGGUAACUCAUUUUUAAUUU
..(((((((--(.----.....))))))))..................((...(.((.(((((((.((........))))))))).)).)...))........... ( -20.60)
>consensus
AAAUGAGAGAGUGACCCCACACUCUCUCCCGAGCAACGUACACUGGCAGAAAAAGCCAGCUUGAUACCAAAUGCGCAGGUCAAACUAGGCAACUCAUUUGCC_UUU
....(((((((((......)))))))))....(((.......(((((.......))))).(((....))).)))................................ (-13.94 = -15.22 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:39 2006