Locus 648

Sequence ID 2R_DroMel_CAF1
Location 3,232,659 – 3,232,753
Length 94
Max. P 0.769370
window1151

overview

Window 1

Location 3,232,659 – 3,232,753
Length 94
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 82.49
Mean single sequence MFE -26.36
Consensus MFE -17.32
Energy contribution -18.36
Covariance contribution 1.04
Combinations/Pair 1.05
Mean z-score -1.99
Structure conservation index 0.66
SVM decision value 0.52
SVM RNA-class probability 0.769370
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3232659 94 - 20766785
--AG-CCGUGUUAAUCACAUCCACUAAGUCUAAGUCAGCUGAAAUUGACUCAUAUUAGUCCGCAUUUGGCGC------AGGCUGAGGCAUUCAAUUAGCCAGC
--.(-(((((.....)))....(((((.....((((((......))))))....)))))........)))((------.((((((.........)))))).)) ( -23.60)
>DroSec_CAF1 1906 77 - 1
--------------UCACAGCCACUA------AGUCAGCUGAAAUUGACUCAUAUUAGUCCGCAUUUGGCGG------AGGCUGAGGCAUUCAAUUAGCCAGU
--------------...(((((....------((((((......))))))........(((((.....))))------)))))).(((.........)))... ( -25.30)
>DroSim_CAF1 5115 88 - 1
--AG-CCGAGUUAAUCACAGCCACUA------AGUCAGCUGAAAUUGACUCAUAUUAGUCCGCAUUUGGCGG------AGGCUGAGGCAUUCAAUUAGCCAGU
--((-((((((((((..((((.....------.....))))..)))))))).......(((((.....))))------)))))..(((.........)))... ( -31.20)
>DroEre_CAF1 1686 96 - 1
UCAGCCCGAUUAAUUCACAGC-AUUA------AGUCAGCUGAAAUUGACUCAUGUUAGUCCCCAUUUGGCGGAGGCGGAGGCUGAGGCAUUCAAUUAGCCAGC
(((((((((((((((..((((-....------.....)))).)))))).)).((((..(((((....)).)))))))).))))))(((.........)))... ( -26.50)
>DroYak_CAF1 1693 90 - 1
UAAGCCCGAUUUAAUCACAGC-ACUA------AGUCAGCUGAAAUUGACUCAUAUUUGUCCGCAUUUGGCGG------AGGCUGAGGCAUUCAAUAAGCCAGA
..((((.((.(((((..((((-....------.....))))..))))).)).......(((((.....))))------)))))..(((.........)))... ( -25.20)
>consensus
__AG_CCGAGUUAAUCACAGCCACUA______AGUCAGCUGAAAUUGACUCAUAUUAGUCCGCAUUUGGCGG______AGGCUGAGGCAUUCAAUUAGCCAGC
.................(((((((((......((((((......)))))).....))))((((.....)))).......))))).(((.........)))... (-17.32 = -18.36 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:38 2006