Locus 6451

Sequence ID 2R_DroMel_CAF1
Location 20,141,451 – 20,141,554
Length 103
Max. P 0.665995
window10289

overview

Window 9

Location 20,141,451 – 20,141,554
Length 103
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 79.55
Mean single sequence MFE -29.63
Consensus MFE -19.47
Energy contribution -18.52
Covariance contribution -0.94
Combinations/Pair 1.36
Mean z-score -1.47
Structure conservation index 0.66
SVM decision value 0.28
SVM RNA-class probability 0.665995
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20141451 103 + 20766785
-----CAUCUAUUGAUGGCCAUGGUGACGGUGGUCAAGUCCGGAGCACGCCUAUGGUCAUUAGGCUAAGACCCCAGGGCCGUAAAAUGGCGAAGGCAAUUACCAGAUA
-----.((((....((((((..(....)((.((((..((.....))..(((((.......)))))...))))))..))))))......((....)).......)))). ( -33.40)
>DroPse_CAF1 25570 100 + 1
-------UCAUUUGACGACCCUGGAGCUU-GGGUCAAAUCCUGGACACGCCUAUGGUCAUUAAGCUGGCACCCGAAAGCAAUAAAAAAGCAAAGGCAAUUACCAGAUA
-------.........(((((........-))))).....((((....((((.((((((......))))...(....)...........)).)))).....))))... ( -24.70)
>DroSec_CAF1 26005 103 + 1
-----CAUCUAUUGAUGGCCGUGGUGACGGUGGUCAAGUCCGGAGCACGCCUAUGGUCAUUAGGCUAAGACCCCAGGGCCGUAAAAAGGCGAAGGCAAUUACCAGAUA
-----.((((....((((((.(((.(...(((.((.......)).)))(((((.......))))).....).))).))))))......((....)).......)))). ( -33.60)
>DroEre_CAF1 28370 102 + 1
-----CAUCUAUUGAUGGCCAUGGUGACGGUGGUCAAGUCCGGAGCACGCCUAUGGUCAUUAGGCUAAGACCCUGGGGCCGUAAAAAGGC-AAGGCAAUUACCAGAUA
-----.((((..((((((((((((.(...(((.((.......)).))).)))))))))))))((.(((...(((...(((.......)))-.)))...))))))))). ( -34.10)
>DroAna_CAF1 29509 100 + 1
UGCCUCAUCAGUUGAUGACCGUGG------CGGUCAAAUCCGGAGCACGCCUAUGGUCAUUAAGCUGGCACC-CAAAGCAAUAAAAAAGCAA-AGCAAUUACCAGAUA
(((....(((((((((((((((((------(((((.......)).).)))).))))))))).))))))....-....((.........))..-.)))........... ( -27.30)
>DroPer_CAF1 25563 100 + 1
-------UCAUUUGACGACCCUGGAGCUU-GGGUCAAAUCCUGGACACGCCUAUGGUCAUUAAGCUGGCACCCGAAAGCAAUAAAAAAGCAAAGGCAAUUACCAGAUA
-------.........(((((........-))))).....((((....((((.((((((......))))...(....)...........)).)))).....))))... ( -24.70)
>consensus
_____CAUCAAUUGAUGACCAUGGUGACG_UGGUCAAAUCCGGAGCACGCCUAUGGUCAUUAAGCUAACACCCCAAAGCAAUAAAAAAGCAAAGGCAAUUACCAGAUA
...........(((((((((((((......(((......)))........)))))))))))))(((..(....)..))).........((....))............ (-19.47 = -18.52 +  -0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:19 2006