Locus 6450

Sequence ID 2R_DroMel_CAF1
Location 20,138,226 – 20,138,325
Length 99
Max. P 0.819843
window10288

overview

Window 8

Location 20,138,226 – 20,138,325
Length 99
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 87.95
Mean single sequence MFE -26.69
Consensus MFE -17.95
Energy contribution -17.59
Covariance contribution -0.36
Combinations/Pair 1.19
Mean z-score -2.70
Structure conservation index 0.67
SVM decision value 0.68
SVM RNA-class probability 0.819843
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20138226 99 + 20766785
AUUGGAGUUAUCUGUUCGAAUUAAUCCGUUUUGUGUGUG--------GCCAUCUUGCUACCAUCUAAUGGAAUAUUUCGAUUAGGAUCUAUUUAUAUAUCUCAGUUA
..((((....((((.(((((.((.((((((..(((.(((--------((......))))))))..)))))).)).))))).)))).))))................. ( -26.50)
>DroSec_CAF1 22778 97 + 1
AUUGGAGUUAUCUGUUCGGAUUAAUCCGUUUUGUGUGUG--------GCCAUCCUGCUACCAUCUAAUGGAAUAUUUCGAUUAGGAUCUAUUUAU--AUCUCAGUUA
..((((....((((.(((((.((.((((((..(((.(((--------((......))))))))..)))))).)).))))).)))).)))).....--.......... ( -26.00)
>DroSim_CAF1 23629 97 + 1
AUUGGAGUUAUCUGUUCGGAUUAAUCCGUUUUGUGUGUG--------GCCAUCUUGCUACCAUCUAAUGGAAUAUUUCGAUUAGGAUCUAUUUAU--AUCUCAGUUA
..((((....((((.(((((.((.((((((..(((.(((--------((......))))))))..)))))).)).))))).)))).)))).....--.......... ( -26.00)
>DroEre_CAF1 25260 100 + 1
AUUGGAGUUAUCUGUUCGGAUUAAUCCAUUUUGUGUGCGUG-----UGGCAUCUUGCUGCCAUCUAAUGGAA--UUUCGAUUAGGAUCUAUAAAUAGGUCGCAGUUA
..((((...((((....))))...)))).......(((..(-----(((((......))))))(((((.(..--...).)))))((((((....))))))))).... ( -27.10)
>DroYak_CAF1 23410 107 + 1
AUUGGAGUUAUCUCUUUGGAUUAAUCCAUUUUGUGUGUGUGUGUGGUGGCAUCUUGCUGCCAUUUAAUGGAAUAUUUCGAUUAGGAUCUAUAAAUAGGUCUCAGUUA
...((((....))))..(((.((.((((((............((((..((.....))..))))..)))))).)).)))((((..((((((....))))))..)))). ( -27.84)
>consensus
AUUGGAGUUAUCUGUUCGGAUUAAUCCGUUUUGUGUGUG________GCCAUCUUGCUACCAUCUAAUGGAAUAUUUCGAUUAGGAUCUAUUUAUA_AUCUCAGUUA
..((((....((((.(((((.((.((((((..(((.(((..................))))))..)))))).)).))))).)))).))))................. (-17.95 = -17.59 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:18 2006