Locus 645

Sequence ID 2R_DroMel_CAF1
Location 3,223,126 – 3,223,246
Length 120
Max. P 0.833530
window1144

overview

Window 4

Location 3,223,126 – 3,223,246
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.59
Mean single sequence MFE -40.52
Consensus MFE -28.15
Energy contribution -28.76
Covariance contribution 0.61
Combinations/Pair 1.19
Mean z-score -2.18
Structure conservation index 0.69
SVM decision value 0.72
SVM RNA-class probability 0.833530
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3223126 120 + 20766785
UUCUGGUGGGUGGUGCCCAGGAGGCACUAGACUCGCACCCUGGCAAAUAUAUAUUGACACUGAAGAACCGCAAGGGAUUCGUUAAAAUGGCCAUUAGGACAGGGUAGGUUGAAAUCGGAU
.((((((((((((((((.....))))))..))))))((((((.......(((.(((((...(((...((....))..)))))))).))).((....)).))))))..........)))). ( -38.90)
>DroPse_CAF1 5877 119 + 1
UACUUGUGGGUGGCGCCCAAGAGGCCAUGGACUCGCAUCCUGGCCAAUAUAUACUGACCCUGAAGAGCCGCAAGGGAUUCGUCAAAAUGGCCAUAAGAACAGGGUGAGUGUAUAAUGGA-
......((((.....))))...(((((.(((......))))))))..((((((((.((((((..(((((....))..)))(((.....)))........)))))).)))))))).....- ( -45.70)
>DroEre_CAF1 5702 119 + 1
UUCUGGUGGGUGGUGCCCAGGAGGCACUGGACUCGCACCCUGGCAAAUACAUAUUGACCCUAAAGAACCGCAAGGGAUUCGUUAAAAUGGCCAUUAGAACAGGGUAGGUAGG-UUCGGAU
.((((((.((.(((((((((......))))....))))))).))....((.(((..(((((...((.((....))...))(((..(((....)))..))))))))..))).)-).)))). ( -36.70)
>DroYak_CAF1 5788 119 + 1
UUCUGGUGGGUGGUGCCCAGGAGGCACUGGACUCGCACCCUGGCAAAUAUAUAUUGACCCUGAAGAACCGCAAGGGGUUCGUAAAAAUGGCCAUUAGGACAGGGUAGGUAGA-UUCGGGU
.((((((.((.(((((((((......))))....))))))).)).......(((..((((((.....((....))(((.(((....)))))).......))))))..)))..-..)))). ( -40.40)
>DroAna_CAF1 7711 118 + 1
UUUUGGUGGGUGGUGCUCAAGAGGCACUAGAUUCCCAUCCAGGACAGUACAUUUUGACUUUGAGAAACCGAAAGGGAUUCGUCAAAAUGGCUAUUCGAACGGGGUGAGUGAAAAUU--AU
(((((((((((((((((.....)))))))....)))).)))))).....(((((((((...(((...((....))..))))))))))))(((((((.....)))).))).......--.. ( -35.60)
>DroPer_CAF1 5878 119 + 1
UACUUGUGGGUGGCGCCCAAGAGGCCAUGGACUCGCAUCCUGGCCAAUAUAUACUGACCCUGAAGAGCCGCAAGGGAUUCGUCAAAAUGGCCAUAAGAACAGGGUGAGUGUAUAAAGAA-
..(((.((((.....))))...(((((.(((......))))))))..((((((((.((((((..(((((....))..)))(((.....)))........)))))).)))))))))))..- ( -45.80)
>consensus
UUCUGGUGGGUGGUGCCCAAGAGGCACUGGACUCGCACCCUGGCAAAUAUAUAUUGACCCUGAAGAACCGCAAGGGAUUCGUCAAAAUGGCCAUUAGAACAGGGUAAGUGGA_AUCGGAU
.....((((((((((((.....))))))..))))))((((((.......(((.(((((...(((...((....))..)))))))).)))..........))))))............... (-28.15 = -28.76 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:32 2006