Locus 6447

Sequence ID 2R_DroMel_CAF1
Location 20,122,237 – 20,122,329
Length 92
Max. P 0.937371
window10284

overview

Window 4

Location 20,122,237 – 20,122,329
Length 92
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 81.00
Mean single sequence MFE -24.32
Consensus MFE -15.48
Energy contribution -16.01
Covariance contribution 0.53
Combinations/Pair 1.18
Mean z-score -2.96
Structure conservation index 0.64
SVM decision value 1.26
SVM RNA-class probability 0.937371
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20122237 92 + 20766785
--CUCUUGC--UCUCC--------CUCAUCUCGAGA---------ACGAGUUCAGUGGCCC-AACCACGACAAAUAUUUAUGUUUGCCCUCCUCAAAUGCCUG-AAGAACUCACC
--.....(.--((((.--------........))))---------.)((((((.((((...-..))))..((((((....)))))).................-..))))))... ( -18.20)
>DroSec_CAF1 6979 92 + 1
--CUCUUGC--UCUCC--------CUCAUCUCGAGA---------ACGAGUUCAGUGGCCC-AACCAGGGCAAAUAUUUAUGUUUGCCCUCCUCAAAUGCCCA-AAGAACUCACC
--.....(.--((((.--------........))))---------.)((((((..((((..-....((((((((((....))))))))))........).)))-..))))))... ( -26.74)
>DroSim_CAF1 7513 92 + 1
--CUCUUGC--UCUCC--------CUCAUCUCGAGA---------ACGAGUUCAGUGGCCC-AACCAGGGCAAAUAUUUAUGUUUGCCCUCCUCAAAUGCCCG-AAGAACUCACC
--.....(.--((((.--------........))))---------.)((((((.(.(((..-....((((((((((....))))))))))........)))).-..))))))... ( -27.14)
>DroEre_CAF1 6980 101 + 1
--CUCUCGC--CCUCA--------CUCUUCUCGAGAACUCUCCGAACGAGUUCAGUGGCCC-AACCACGGCCCAUAUUUAUGUUUGCCCUCCUCAAAUGCCUG-AAGAACUCACC
--.(((((.--.....--------.......)))))...........((((((.((((...-..))))(((.(((....)))...)))...............-..))))))... ( -20.92)
>DroYak_CAF1 6948 92 + 1
--CUCUCGC--UCCCA--------CUCAUCUCGAGA---------ACGAGUUCAGUGGCCC-AAGCACGGCAAAUAUUUAUGUUUGCCCACCUCAAAUGCUUG-GAGAACUCACC
--.((((..--..(((--------((...((((...---------.))))...)))))..(-(((((.((((((((....)))))))).........))))))-))))....... ( -28.90)
>DroAna_CAF1 6369 106 + 1
GACUCUUGGACUCUCCUUUUCUGUGUCAUCUCGAGA---------AUGGGUUCAGUGGCCCUAACUAACGCAAAUAUUUAUGUUUGCUCUCAUCGGAUUCCCAGAUUCACUUACC
((.(((.(((...(((......(.(....).)((((---------..((((......))))........(((((((....)))))))))))...))).))).))).))....... ( -24.00)
>consensus
__CUCUUGC__UCUCC________CUCAUCUCGAGA_________ACGAGUUCAGUGGCCC_AACCACGGCAAAUAUUUAUGUUUGCCCUCCUCAAAUGCCCG_AAGAACUCACC
...(((((.......................)))))...........((((((...(((.........((((((((....))))))))..........))).....))))))... (-15.48 = -16.01 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:14 2006