| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,121,077 – 20,121,183 |
| Length | 106 |
| Max. P | 0.533281 |
| Location | 20,121,077 – 20,121,183 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 78.94 |
| Mean single sequence MFE | -31.69 |
| Consensus MFE | -22.83 |
| Energy contribution | -23.00 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.533281 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20121077 106 - 20766785 UCUGACGGUCCACCUGCUCCAAUACGUCGGAAAUGUGCGGCAGCACCAGGGACGUGUUGUUUUGCAGCGUGUUCUUCUGCAGAAUCAAAGCAUAUACUACGAGUAA ((((..((..(((((((..(((((((((......((((....))))....)))))))))....)))).)))..))....))))...........(((.....))). ( -31.80) >DroVir_CAF1 6220 101 - 1 UUUGCCGAUCCACCUGCUCCAGCACAUCCGAAAUGUGGGGCAGCACCAGUGAUGUGUUGUUCUGCAGCGUAUUCUUCUGCAAAAGACAAACG-----UAUGAGUAU (((((.((...((((((.....(((((.....)))))(((((((((.(....)))))))))).)))).)).....)).))))).........-----......... ( -25.60) >DroGri_CAF1 6013 102 - 1 UUUGGCGAUCCACCUGCUCCAGCACGUCCGAAAUGUGCGGCAGCACCAACGAUGUAUUACUUUGAAGCGUAUUCUUCUGCAAAACGUAACAG----CUUAGAGUAG ....((.(((....((((((.((((((.....)))))))).)))).....)))))..((((((((.((.(((.............)))...)----))))))))). ( -21.32) >DroEre_CAF1 5806 106 - 1 UCUGACGGUCCACCUGCUCCAGCACGUCGGAAAUGUGCGGCAGCACCAGUGACGUGUUGCUUUGCAGCGUGUUCUUCUGCAGAAUCAAAGCAUGGACUAUGAGUAC .((.(..(((((..((((.((((((((((.....((((....))))...)))))))))).(((((((.........))))))).....)))))))))..).))... ( -38.20) >DroYak_CAF1 5759 106 - 1 UCUGACGGUCCACCUGUUCCAGCACGUCGGAGAUGUGCGGCAGCACCAGCGAUGUGUUGCUUUGCAGCGUGUUCUUCUGCAGAAUCAAAGCAUAGACCAUGAGUAA .((.(.(((((((((((..((((((((((.....((((....))))...))))))))))....)))).)))......(((.........)))..)))).).))... ( -33.70) >DroAna_CAF1 5145 106 - 1 UCUGGCGGUCUACUUGCUCCAGUACAUCGGAUAUGUGUGGCAGCACCAGCGAGGUAUUGUUUUGCAGAGUGUUUUUCUGCAAAGUAAAGGAGUAGGUCAUCAGAAA ((((..(..((((((((((((.(((((.....)))))))).)))(((.....))).(((((((((((((.....)))))))))))))..))))))..)..)))).. ( -39.50) >consensus UCUGACGGUCCACCUGCUCCAGCACGUCGGAAAUGUGCGGCAGCACCAGCGAUGUGUUGCUUUGCAGCGUGUUCUUCUGCAAAAUCAAAGCAUAGACUAUGAGUAA ((((.(((..(((((((..(((((((((......((((....))))....)))))))))....)))).))).....)))))))....................... (-22.83 = -23.00 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:13 2006