Locus 643

Sequence ID 2R_DroMel_CAF1
Location 3,221,567 – 3,221,666
Length 99
Max. P 0.511180
window1141

overview

Window 1

Location 3,221,567 – 3,221,666
Length 99
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 84.88
Mean single sequence MFE -28.68
Consensus MFE -19.95
Energy contribution -21.95
Covariance contribution 2.00
Combinations/Pair 1.16
Mean z-score -1.45
Structure conservation index 0.70
SVM decision value -0.04
SVM RNA-class probability 0.511180
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3221567 99 - 20766785
----------AUGCUCGAGU---UUCCCAUGUGAGUGUUUCGAGUACUCGAAUGCGAUGCAACAAUUGAGUCACCAAUGUAAUCGAGCGUUCU--AUACGAAUAACCUGAAUCA-----
----------..((((((((---.((.(((.((((((.......)))))).))).)).)).(((.(((......))))))..))))))((((.--....))))...........----- ( -22.30)
>DroSim_CAF1 4662 117 - 1
UCAGAGAGCAAUGCUCGAUAUUAUUCCCAUGUGAGUGUUUCGAGUACUCGAAUGCGAUGCAACAAUUGAGUCACCGACGUAAUCGAGCGUUCU--AUACGAAUAACCUGAAUCAGAGCA
((((.(((...(((((((...(((((......)))))..))))))))))(((((((((.((.....)).)))..(((.....))).)))))).--...........))))......... ( -28.20)
>DroEre_CAF1 4169 110 - 1
UCAGAGAGCAAUGCUCGAGA---UUCCCAUGUGAGUGUUUUGACUACUCGAAUAC-UUGCAACAAUUGAGUCACCGACGUAAUCGAGCGUUCUCUGUGUGAAUAACCUGAAUCA-----
.((.((((.(((((((((((---(((...((..(((((((.((....))))))))-)..))......)))))((....))..))))))))))))).))................----- ( -32.40)
>DroYak_CAF1 4185 111 - 1
UCAGAGAGCAAUGCUCGAAA---UUCCCAUGUGAGUGUUUCGAGUACUCGAAUGCGAUGCAACAAUUGAGUCACCAACGUAAUCGAGCGUUCUCUACACGAAUAACCUGAAUCA-----
..(((((((..(((((((((---(.(.(....).).))))))))))(((((.((((.((..((......))...)).)))).))))).)))))))...................----- ( -31.80)
>consensus
UCAGAGAGCAAUGCUCGAGA___UUCCCAUGUGAGUGUUUCGAGUACUCGAAUGCGAUGCAACAAUUGAGUCACCAACGUAAUCGAGCGUUCU__AUACGAAUAACCUGAAUCA_____
..(((((((..(((((((((...(((......)))..)))))))))(((((.((((.((..((......))...)).)))).))))).)))))))........................ (-19.95 = -21.95 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:29 2006