Locus 6426

Sequence ID 2R_DroMel_CAF1
Location 20,067,871 – 20,067,973
Length 102
Max. P 0.530359
window10253

overview

Window 3

Location 20,067,871 – 20,067,973
Length 102
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 78.00
Mean single sequence MFE -27.38
Consensus MFE -19.27
Energy contribution -19.38
Covariance contribution 0.11
Combinations/Pair 1.19
Mean z-score -1.01
Structure conservation index 0.70
SVM decision value -0.01
SVM RNA-class probability 0.530359
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20067871 102 - 20766785
CAUUCCACUGUACGCCAACGAGGAGAAAACUAUCUACAACAUGGUGGUGGAGGUGCCACGUUGGACCAACGCGAAAAUGGAGGUCGGUC-UGCCUGUCCCUA---------A
...((((.....(((((......(((......)))......)))))(((..(((.((.....)))))..))).....))))((.(((..-...))).))...---------. ( -24.90)
>DroVir_CAF1 30716 100 - 1
CAUUCCAUUGUACGCCAACGAGGAGAAGACCAUCUACAACAUGGUCGUCGAGGUGCCACGUUGGACGAACGCCAAAAUGGAGGUAAAU------AG------CAUAAUUAUC
..(((((((((.((((((((.((.((.((((((.......)))))).))......)).)))))).)).)).....)))))))......------..------.......... ( -27.50)
>DroPse_CAF1 4680 91 - 1
CAUUCCAUUGUACGCCAAUGAGGAGAAGACCAUCUACAACAUGGUGGUGGAGGUUCCACGUUGGACCAACGCCAAGAUGGAGGUAAGC------------AA---------A
..(((((((....((((.((..((((......))).)..))))))((((..(((((......)))))..))))..)))))))......------------..---------. ( -26.00)
>DroWil_CAF1 833 100 - 1
CAUUCCAUUGUAUGCCAAUGAGGAGAAGACCGUCUACAAUAUGGUUGUUGAGGUGCCCCGUUGGACAAACGCCAAAAUGGAGGUAAGCA-AACAUGUCUCA-----------
.....(((((.....)))))..((((.((((((.......))))))(((....(((((((((((.(....))))..)))).))))....-)))...)))).----------- ( -24.50)
>DroAna_CAF1 4894 103 - 1
CAUUCCCCUCUACGCCAAUGAGGAUAAGUCCAUCUACAACAUGGUGGUGGAGGUGCCACGUUGGACCAACGCCAAGAUGGAGGUGGGCAAUGAUUGAUCCAU---------A
((.((.((((.........))))....((((((((....(((..(((((..(((.((.....)))))..)))))..))).))))))))...)).))......---------. ( -35.40)
>DroPer_CAF1 8991 91 - 1
CAUUCCAUUGUACGCCAAUGAGGAGAAGACCAUCUACAACAUGGUGGUGGAGGUUCCACGUUGGACCAACGCCAAGAUGGAGGUAAGC------------AA---------A
..(((((((....((((.((..((((......))).)..))))))((((..(((((......)))))..))))..)))))))......------------..---------. ( -26.00)
>consensus
CAUUCCAUUGUACGCCAAUGAGGAGAAGACCAUCUACAACAUGGUGGUGGAGGUGCCACGUUGGACCAACGCCAAAAUGGAGGUAAGC______UG____AA_________A
..(((((((...((((((((.((.....(((.(((((.((...)).)))))))).)).)))))).....))....))))))).............................. (-19.27 = -19.38 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:42 2006