Locus 6425

Sequence ID 2R_DroMel_CAF1
Location 20,067,212 – 20,067,322
Length 110
Max. P 0.523089
window10252

overview

Window 2

Location 20,067,212 – 20,067,322
Length 110
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 70.31
Mean single sequence MFE -34.95
Consensus MFE -10.50
Energy contribution -11.70
Covariance contribution 1.20
Combinations/Pair 1.21
Mean z-score -1.95
Structure conservation index 0.30
SVM decision value -0.02
SVM RNA-class probability 0.523089
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20067212 110 - 20766785
AUGCCAAGAAUGCGGACUUUGCCAACACCAUCAUUGCCGAGACCCACAAGUUCUGGCAGAACUUGGUGCACCAGAGCCCCGCAUCCG---GGUCCAUCUCCACGUGGGUUAA---A
..(((..((.(((((.(((((....(((((...((((((..((......))..))))))....)))))...)))))..)))))))..---)))((((......)))).....---. ( -36.00)
>DroVir_CAF1 30024 116 - 1
AUGCCAAGAGCGCAGACUUUGCCACCUCCAUCAUUGCGGAGACGCACAAGUUCUGGCAAACCCUGAUCAAUCAGUCCAAUGUGGGCACGCCGGAAAUAGCUUGGUUUGUUUAUAUU
.(((((.((((((((...))))............((((....))))...)))))))))....((((....))))...((((((((((.(((((.......))))).)))))))))) ( -35.10)
>DroPse_CAF1 4005 113 - 1
AUGCGAAGAAUGCCGAUUUCGCGACUUCGAUCAUUGCCGAGACCCACAAGUUCUGGCAGACUCUGAUCCACCAGAGCAGUGUGGGCGACCACUCAAUCUCUUGGUGAGUUUU---G
..((((((........))))))((((..(((((((((((..((......))..))))))....)))))((((((((..(.((((....)))).)...))).)))))))))..---. ( -37.60)
>DroWil_CAF1 156 106 - 1
AUGCCAAGAAUGCUGAAUUUGCUACCACAAUUGUGGCAGAGACACACAAGUUUUGGCAAACUUUGAUCAAUCAAACCAGUGCUGGU------GGCAUUUCUUGGUAUGUUUA----
(((((((((((((((..((((((((.......))))))))..))(((.(((.((((.....(((((....))))))))).))).))------)))).)))))))))).....---- ( -35.20)
>DroAna_CAF1 4236 110 - 1
AUGCUAAGAAUGCUGAUUUCGCCAACACCAUUAUUGCCGAGACUCACAAGUUCUGGCAGAAUCUGGUACACCAGACCAGCUCUUCCA---GCACUAUUUCAACGUGCGUCUA---G
......(((..((((..................((((((..(((....)))..))))))..(((((....))))).)))).......---((((.........)))).))).---. ( -28.10)
>DroPer_CAF1 8317 113 - 1
AUGCGAAGAACGCCGAUUUCGCGACUUCGAUCAUUGCCGAGACCCACAAGUUCUGGCAGACUCUGAUCCACCAGAGCAGUGUGGGCGACCACUCAAUCUCUUGGUGAGUUUU---G
...(((((..(((.(....)))).)))))....(..((((((((((((.(((((((..((......))..)))))))..)))))).((....))....))))))..).....---. ( -37.70)
>consensus
AUGCCAAGAAUGCCGAUUUCGCCACCACCAUCAUUGCCGAGACCCACAAGUUCUGGCAGACUCUGAUCCACCAGACCAGUGCGGGCG___ACUCAAUCUCUUGGUGAGUUUA___G
..((.((((........................((((((..((......))..))))))..(((((....))))).......................)))).))........... (-10.50 = -11.70 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:41 2006