| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,058,146 – 20,058,246 |
| Length | 100 |
| Max. P | 0.644243 |
| Location | 20,058,146 – 20,058,246 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 90.62 |
| Mean single sequence MFE | -18.80 |
| Consensus MFE | -15.82 |
| Energy contribution | -14.70 |
| Covariance contribution | -1.12 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.644243 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20058146 100 + 20766785 AAAUUGCAAUUAAUAAAAUACCAGUAGUUAUAGCUUAUGUGUCAAUACUAGUUAGCUAAACUGGCUAAUUAGGCAAUAGCGAUUACAACUCCCCAGGAAA .((((((..........((((....(((....)))...)))).....((((((((((.....))))))))))......)))))).....(((...))).. ( -19.60) >DroSec_CAF1 17755 99 + 1 AAAUUGCAAUUAAAAAAAUACCAGUAGUUAUAGCGUAUGUGUCAAUACUAGCUAGCUAAACUGGCUAAUUAGGCAAUAGCAAUUACAACUC-CCAGGAAA .((((((..............((((.....((((((((......))))..)))).....))))(((.....)))....)))))).....((-....)).. ( -18.20) >DroSim_CAF1 18235 99 + 1 AAAUUGCAAUUAAUAAAAUACCAGUAGUUAUAGCGUAUGUGUCAAUACUAGCUAGCUAAACUGGCUAAUUAGGCAAUAGCAAUUACAACUC-CCAGGAAA .((((((..............((((.....((((((((......))))..)))).....))))(((.....)))....)))))).....((-....)).. ( -18.20) >DroYak_CAF1 18354 99 + 1 AAAUUGCAAUUCAUAAUGUACCAGUAGUUAUAAUUUAUGUGCCAAUACUAGUUGGGUAAACUGGCUAAUUAGGCAAUCACAACUACAGCUC-CCUGGAAA ....((((........))))((((.((((..........(((((((..((((..(.....)..))))))).))))...........)))).-.))))... ( -19.20) >consensus AAAUUGCAAUUAAUAAAAUACCAGUAGUUAUAGCGUAUGUGUCAAUACUAGCUAGCUAAACUGGCUAAUUAGGCAAUAGCAAUUACAACUC_CCAGGAAA .......................((((((...((.....(((((((..(((((((.....)))))))))).))))...)))))))).............. (-15.82 = -14.70 + -1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:34 2006