Locus 641

Sequence ID 2R_DroMel_CAF1
Location 3,216,640 – 3,216,740
Length 100
Max. P 0.512976
window1139

overview

Window 9

Location 3,216,640 – 3,216,740
Length 100
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 85.80
Mean single sequence MFE -34.23
Consensus MFE -26.36
Energy contribution -27.20
Covariance contribution 0.84
Combinations/Pair 1.27
Mean z-score -1.91
Structure conservation index 0.77
SVM decision value -0.04
SVM RNA-class probability 0.512976
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3216640 100 - 20766785
ACUGCUGUCGCCUCCGCCGGACACCAUGUCCACCGAUUCCCUACAGCUGUCCACACUGCCCGGUGCGCACCAUCUCCAGCUGCUGUCCACUGGGCAGUCG
((.(((((.((....)).((((.....))))...........))))).))....(((((((((((.(((.((.(....).)).))).))))))))))).. ( -35.90)
>DroPse_CAF1 10168 100 - 1
ACUUCUGCAGCCAGCAAGAGAGCCCCUGUCCGCAGAUUCCCUACGCUUGUCCGAACUGUCCGGUACGGGACAUCACCAGGAGUUGUUCGCUGCAGCGAAG
....(((((((.(((((........(((....)))....(((.....((((((.(((....))).).))))).....)))..))))).)))))))..... ( -29.80)
>DroSec_CAF1 8368 100 - 1
ACUGCUGUCGCCUCCGCCGGACACCAUGUCCACCGAUUCCCUACAGCUGUCCACACUGCCCGGUGCGCACCAUCUCCAGCUGCUGUCCAUUGGGCAGUCG
((.(((((.((....)).((((.....))))...........))))).))....(((((((((((.(((.((.(....).)).))).))))))))))).. ( -33.50)
>DroSim_CAF1 585 100 - 1
ACUGCUGUCGCCUCCGCCGGACACCAUGUCCACCGAUUCCCUACAGCUGUCCACACUGCCCGGUGCGCACCAUCUCCAGCUGCUGUCCACUGGGCAGUCG
((.(((((.((....)).((((.....))))...........))))).))....(((((((((((.(((.((.(....).)).))).))))))))))).. ( -35.90)
>DroEre_CAF1 5509 100 - 1
ACUGUUGUCGCCUCCGCCGGACACCAUGUCCACCGAUUCCCUACAGCUGUCCACACUGUCCGGUGCGCACCAUCUCCAGCUGCUGCCCACUGGGCAGUCG
.((((.(((((....)).((((.....))))...))).....))))........(((((((((((.(((.((.(....).)).))).))))))))))).. ( -32.80)
>DroYak_CAF1 5276 100 - 1
ACUGCUGUCGCCUUCGCCGGACACCAUGUCCACCGAUUCCCUACAGCUGUCCACACUGCCCGGUGCGCACCAUCUCUAGCUGCUGCCCAUUGGGCAGUCG
((.(((((.(...(((..((((.....))))..)))....).))))).))....(((((((((((.(((.((.(....).)).))).))))))))))).. ( -37.50)
>consensus
ACUGCUGUCGCCUCCGCCGGACACCAUGUCCACCGAUUCCCUACAGCUGUCCACACUGCCCGGUGCGCACCAUCUCCAGCUGCUGUCCACUGGGCAGUCG
((.(((((......((..((((.....))))..)).......))))).))....(((((((((((.(((.((.(....).)).))).))))))))))).. (-26.36 = -27.20 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:27 2006