Locus 640

Sequence ID 2R_DroMel_CAF1
Location 3,216,128 – 3,216,236
Length 108
Max. P 0.554143
window1138

overview

Window 8

Location 3,216,128 – 3,216,236
Length 108
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 83.98
Mean single sequence MFE -26.40
Consensus MFE -18.84
Energy contribution -18.90
Covariance contribution 0.06
Combinations/Pair 1.38
Mean z-score -1.91
Structure conservation index 0.71
SVM decision value 0.04
SVM RNA-class probability 0.554143
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3216128 108 + 20766785
GGAGCUUUGGAAUGGACACAACAUCG---CUGUCUCCAAAGAGAUCUCUUAACAAUCGUACCAGUUCGUCUUGCUCUCCCAAUAGGAGCAAUACAUCUCCAAAGUCCUCGC
(((.(((((((.((((.(((......---.))).))))((((....)))).................((.(((((((.......))))))).))...)))))))))).... ( -29.30)
>DroSec_CAF1 7856 108 + 1
GAAGUUUUGGAAUGGACACAACAUCG---CUGUCUCCGAAGAGAUCUCUUAACAAUCUUACCAGUUCGUCUUGCUCUCCCAGUAGAAGCAAUACAUCUCCAAAGUCCUCGC
((.((((((((.((((.(((......---.))).))))((((....)))).................((.(((((((......)).))))).))...))))))).).)).. ( -20.10)
>DroSim_CAF1 73 108 + 1
GGAGCUUUGGAAUGGACACAACAUCG---CUGUCUCCGAAGAGAUCUCUUAACAAUCUUACCAUUUCGUCUUGCUCUCCCAAUAGGAGCAAUACAUCUCCAAAGUCCUCGC
(((.(((((((.((((.(((......---.))).))))((((....)))).................((.(((((((.......))))))).))...)))))))))).... ( -28.70)
>DroEre_CAF1 4997 108 + 1
GGAGCUUUGGAAUGGACACAAGAUCG---CUGUCUCCAAAGAGAUUUCUUAACAAUCUUACCAGUUCGUCUUGUUCCCCCAAUAGGAGCAAUACAUCUCCAAGGUCCUCGC
(((.(((((((.((((.(((......---.))).))))..((((((.......))))))........((.(((((((.......))))))).))...)))))))))).... ( -29.60)
>DroYak_CAF1 4764 108 + 1
GGAGCUUUGGAAUCGAUACAACAUCG---CUGUCUCCAAAGAGAUCUCUUAACAAUCUUACCAGUUCGUCUUGCUCUCCCAAUAAGAGCAAUACAUCUCCAAAGUCCUCGC
(((.(((((((..((((.....))))---..(((((....)))))......................((.(((((((.......))))))).))...)))))))))).... ( -26.80)
>DroAna_CAF1 4569 111 + 1
GAAGAUCCGUAACGGAAACAAUGUCACUACUGCCUCCAAAUAGGUCUUUCAGCAGUCGCACCAGUUCAUCUUGCUCCCCCAAAAGGCACAGAAUGUUACCGUGAUCAUCAC
((.((((((((((((((....(((.(((.(((...((.....)).....))).))).)))....))).(((((((.........)))).))).))))).)).)))).)).. ( -23.90)
>consensus
GGAGCUUUGGAAUGGACACAACAUCG___CUGUCUCCAAAGAGAUCUCUUAACAAUCUUACCAGUUCGUCUUGCUCUCCCAAUAGGAGCAAUACAUCUCCAAAGUCCUCGC
(((.(((((((....................(((((....)))))......................((.(((((((.......))))))).))...)))))))))).... (-18.84 = -18.90 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:25 2006