Locus 6391

Sequence ID 2R_DroMel_CAF1
Location 19,994,679 – 19,994,792
Length 113
Max. P 0.994848
window10201

overview

Window 1

Location 19,994,679 – 19,994,792
Length 113
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 91.83
Mean single sequence MFE -40.26
Consensus MFE -33.62
Energy contribution -34.18
Covariance contribution 0.56
Combinations/Pair 1.16
Mean z-score -2.39
Structure conservation index 0.84
SVM decision value 2.52
SVM RNA-class probability 0.994848
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19994679 113 + 20766785
CCAUGAGCAUGGGACUGGCCGGCAUGCCGAACAUGACAAACAAGAUUACCAAAAAGGUGAGCCAGCUGAACCGGGUGA--ACUGAGGAAGCCAGGUGGCCUGCUGGCCAAAAGGA
((((....))))...(((((((((.(((.................(((((.....)))))(((.(((...((.((...--.))..)).)))..)))))).)))))))))...... ( -40.90)
>DroSec_CAF1 11180 113 + 1
CCAUGAGCAUGGGACUGGCCGGCAUGCCGAACAUGACAAACAAGAUUACCAAAAAGGUGAGCCAGCUGAACCGGGUGA--ACUGAGGAAGCCAGGUGGCCUGCUGGCCAAAAGGA
((((....))))...(((((((((.(((.................(((((.....)))))(((.(((...((.((...--.))..)).)))..)))))).)))))))))...... ( -40.90)
>DroSim_CAF1 11348 113 + 1
CCAUGAGCAUGGGACUGGCCGGCAUGCCGAACAUGACAAACAAGAUUACCAAAAAGGUGAGCCAGCUGAACCGGGUGA--ACUGAGGAAGCCAGGUGGCCUGCUGGCCAGAAGGA
((((....))))..((((((((((.(((.................(((((.....)))))(((.(((...((.((...--.))..)).)))..)))))).))))))))))..... ( -44.20)
>DroEre_CAF1 12706 113 + 1
CCAUGAGCAUGGGACUGGCCGGCAUGCCGAACAUGACAAACAAGAUUACCAAAAAGGUAAGUCAGCUGAACCGGGUGA--ACUGGGGAAGUCAGGUGGCCAGGUGGACAGCUGGC
((((....)))).....((((((.(((((....((..........(((((.....)))))((((.((((.((.((...--.)).))....)))).))))))..))).)))))))) ( -39.70)
>DroYak_CAF1 12471 115 + 1
CCAUGAGCAUGGGACUGGCCGGCAUGCCGAACAUGACAAACAAGAUUACCAAAAAGGUGAGCCAGCUGAACCGGGUGCACACUGGACAAGUCAGGUGGUCAGAUGGUCAGGUGAC
((((....))))..((((((((....)))................(((((.....))))))))))((((.(((..((..((((.((....)).))))..))..)))))))..... ( -35.60)
>consensus
CCAUGAGCAUGGGACUGGCCGGCAUGCCGAACAUGACAAACAAGAUUACCAAAAAGGUGAGCCAGCUGAACCGGGUGA__ACUGAGGAAGCCAGGUGGCCUGCUGGCCAGAAGGA
((((....))))..((((((((((.(((.................(((((.....)))))(((.(((....(((.......)))....)))..)))))).))))))))))..... (-33.62 = -34.18 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:51 2006