Locus 639

Sequence ID 2R_DroMel_CAF1
Location 3,203,328 – 3,203,423
Length 95
Max. P 0.658368
window1137

overview

Window 7

Location 3,203,328 – 3,203,423
Length 95
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 73.45
Mean single sequence MFE -24.37
Consensus MFE -11.23
Energy contribution -11.87
Covariance contribution 0.64
Combinations/Pair 1.25
Mean z-score -1.81
Structure conservation index 0.46
SVM decision value 0.26
SVM RNA-class probability 0.658368
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3203328 95 - 20766785
-----ACUCGCGGCUACAGAUACAGAUA--CAGAUGCAUUCACGGUCUCAGAUAC------AGAUACACAUUGUAUCUGCCUGUAGAGUAUUUUGAACUCGUGUAAUC
-----......(..((((..(((((...--((((((((......((((.......------))))......)))))))).)))))((((.......)))).))))..) ( -22.50)
>DroVir_CAF1 16018 79 - 1
-------ACACGGCGACACACACA--CACACAGCCAGAGACACGCCC------AC------AGCUGCAC-UUGUAGC-------UGAGUAUUUUGAACUCGUGUAAUC
-------(((((((..........--......))).(((........------.(------((((((..-..)))))-------))...........))))))).... ( -19.54)
>DroSec_CAF1 10377 102 - 1
CCCGCACUCGCGGCUACAGAUACAGAUACACAGAUGCAUUCACGGUUUCAGAUAC------AGAUACACAUUGUAUCUGACUGUGGAGUAUUUUGAACUGGUGUAAUC
.((((....)))).((((....(((...((.((((((.(((((((..((((((((------((.......)))))))))))))))))))))))))..))).))))... ( -32.20)
>DroSim_CAF1 14315 102 - 1
CCCGCACUCGCGGCUACAGAUACAGAUACACAGAUGCAUUCACGGUCUCAGAUAC------AGAUACACAUUGUAUCUGACUGUGGAGUAUUUUGAACUCGUGUAAUC
.((((....)))).............(((((((((((.(((((((((..((((((------((.......))))))))))))))))))))))).(....))))))... ( -32.00)
>DroEre_CAF1 10780 87 - 1
-C------CGC------ACUCGCAGAUA--CAGAUACAUUUAUGGCCUCAGAUAC------AGAUACACAUUGUAUCUGGCAGUGGAGUAUUUUGAACUCGUGUAAUC
-.------...------((.((.((...--.((((((.(((((.(((..((((((------((.......))))))))))).)))))))))))....)))).)).... ( -20.10)
>DroYak_CAF1 10417 92 - 1
--------CGC------AGAUACAAAUG--CAGAUACAUUUACGGUCUCAGAUACAGAUACAGAUACACAUUGUAUCUGGCAGUGGAGUAUUUUGAACUCGUGUAAUC
--------.((------(........))--)((((((.(((((.((((.......)))).(((((((.....)))))))...)))))))))))............... ( -19.90)
>consensus
_______UCGCGGCUACAGAUACAGAUA__CAGAUACAUUCACGGUCUCAGAUAC______AGAUACACAUUGUAUCUGACUGUGGAGUAUUUUGAACUCGUGUAAUC
...................((((.......((((((((......((((.............))))......))))))))......((((.......)))))))).... (-11.23 = -11.87 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:24 2006