| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,946,700 – 19,946,802 |
| Length | 102 |
| Max. P | 0.631514 |
| Location | 19,946,700 – 19,946,802 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 81.15 |
| Mean single sequence MFE | -26.07 |
| Consensus MFE | -16.10 |
| Energy contribution | -16.22 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.631514 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19946700 102 - 20766785 ACGGAUGCCACAGC-AAGGCACUGUAAGUGUGAAGU-----AUUUGCAUGAGAAUAAACAGCGAGUUGAGCAG---CGGAAAUGGCGGGCGGAAGAAGCGCAAAAUAAGUG ((((.((((.....-..))))))))...(((.....-----((((((.((........))))))))...)))(---(.......(((..(....)...))).......)). ( -21.44) >DroSec_CAF1 29755 102 - 1 ACGGAUGCCACAGC-AAGGCGCUUUAAGUGUGAAGU-----AUUUGCAUGAGAAUAAACAGCGAGUUGAGCAG---CGGAAGUGGCGGGCAGAAGAAGCGCAAAAUAAGUG .....(((....))-)..(((((((...(((.....-----((((((.((........))))))))...((.(---(....)).))..)))...))))))).......... ( -24.00) >DroSim_CAF1 32016 102 - 1 ACGGAUGCCACAGC-AAGGCGCUGUAAGUGUGAAGU-----AUUUGCAUGAGAAUAAACAGCGAGUUGAGCAG---CGGAAGUGGCGGGCAGGAGAAGCGCAAAAUAAGUG .(...((((.((((-....((((((..(((..(...-----..)..)))........)))))).)))).((.(---(....)).)).))))...)................ ( -26.40) >DroEre_CAF1 28793 87 - 1 ACGGAUGCCACAGC-AAGGCGCUGUAAGUGUGAAGU-----AUUUGCAUGAGAAUAAACAGCGAGUUGAGCAG---CGGAAGUGGCGGGCAGAGGA--------------- .(...((((.((((-....((((((..(((..(...-----..)..)))........)))))).)))).((.(---(....)).)).))))..)..--------------- ( -26.30) >DroYak_CAF1 27423 92 - 1 ACGGAUGCCACAGC-AAGGCGCUGUAAGUGUGAAGUAUGGUAUUUGCAUGAGAAUAAACAGCGAGCUGAGCAG---CGGAAGUGGCGGGCAGCAGG--------------- .(...((((.((((-....((((((..(((..((........))..)))........)))))).)))).((.(---(....)).)).))))...).--------------- ( -30.70) >DroAna_CAF1 28536 105 - 1 ACGGAUGCCACAGCCAAGGCGCAAUAAGUGUGAAGU-----AUUUGCAUGAGAAUAAACAGCAAAGUGAGCUGCCUCGGAAGUGGAAAAGA-AAACAGCGGCAGCCAAAUG ..((.((((.((((((..((((.....)))).....-----.(((((.((........))))))).)).))))((.(....).))......-.......)))).))..... ( -27.60) >consensus ACGGAUGCCACAGC_AAGGCGCUGUAAGUGUGAAGU_____AUUUGCAUGAGAAUAAACAGCGAGUUGAGCAG___CGGAAGUGGCGGGCAGAAGAAGCGCAAAAUAAGUG .....((((((.......((((.....))))...((.....((((((.((........))))))))...))..........))))))........................ (-16.10 = -16.22 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:15 2006