| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,942,537 – 19,942,640 |
| Length | 103 |
| Max. P | 0.713837 |
| Location | 19,942,537 – 19,942,640 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.91 |
| Mean single sequence MFE | -37.28 |
| Consensus MFE | -22.68 |
| Energy contribution | -23.72 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.713837 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19942537 103 - 20766785 GGCAACAUAAAAGCCACGCGAAAAUUGAACAUCCUGCAGCAGGAUGCGCUGCGUCUUGGCGGUGGA--------------GCAGCACCGGUACCAGGACCAAGCGGCUC---CAGCCGAG (((.........)))(((((......(..(((((((...)))))))..))))))((((((..((((--------------((.((...(((......)))..)).))))---)))))))) ( -38.40) >DroSec_CAF1 25654 114 - 1 GGCAACAUAAAAGCCCAGCGAAAAUUGAACAUCCUGCAGCAGGAUGCGCUGCGUCUUGGCGGUGGAA---AGGCGGUGGCACAGCACCGGUACCAGAACCAAGCGGCUC---CAGCCGAG (((.........)))(((((.........(((((((...))))))))))))...((((((..((((.---..((((((......))))(((......)))..))...))---)))))))) ( -38.20) >DroSim_CAF1 26101 114 - 1 GGCAACAUAAAAGCCAAGCGAAAAUUGAACAUCCUGCAGCAGGAUGCGCUGCGUCUUGGCGGUGGAA---AGGCGGUGGCACAGCACCGGUACCAGAACCAAGCGGCUC---CAGCCGAG (((.........((((((((......(..(((((((...)))))))..)..)).))))))..((((.---..((((((......))))(((......)))..))...))---)))))... ( -40.90) >DroEre_CAF1 24676 88 - 1 GGCAACAUAAAAGCCAAGCGAAAAUUGAACAUCCUGCAGCAGGAUGCGCUGCGUCUUGGCGG--------A-----------GGCACCGGUACCAAGACCAAGCCGC------------- (((.........((..((((.........(((((((...)))))))))))))((((((((((--------.-----------....)))...)))))))...)))..------------- ( -30.30) >DroYak_CAF1 23185 106 - 1 GGCAACAUAAAAGCCGAGCGAAAAUUGAACAUCCUGCAGCAGGAUGCGCUGCGUCUUGGCGGUGAAA---A-----------AGCACCGGCACCAGGAACAAGCCGCUCCUCCCGCCAAG (((.........)))(((((.........(((((((...))))))).(((...(((((((((((...---.-----------..)))))...))))))...))))))))........... ( -38.60) >DroAna_CAF1 23550 116 - 1 AGCAACAUAAAAGGCAAGCGAAAAUUGAACAUCCUGCAGCAGGAUGCGUUGCGCCAGAACGGUCGGUGGUUGGCGGUUGC--UGGUUUGCUGGUUGGUUCAAGGAGUUC--CCGGCCAAG .(((((........(((.......)))..(((((((...))))))).)))))((((((((.((((.....)))).))).)--))))..(((((..(.((....)).)..--))))).... ( -37.30) >consensus GGCAACAUAAAAGCCAAGCGAAAAUUGAACAUCCUGCAGCAGGAUGCGCUGCGUCUUGGCGGUGGAA___A___________AGCACCGGUACCAGGACCAAGCGGCUC___CAGCCGAG (((..........................(((((((...))))))).(((((((((((((((((....................)))))...)))))))...))))).......)))... (-22.68 = -23.72 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:10 2006