Locus 6360

Sequence ID 2R_DroMel_CAF1
Location 19,942,177 – 19,942,267
Length 90
Max. P 0.895446
window10160

overview

Window 0

Location 19,942,177 – 19,942,267
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 92.56
Mean single sequence MFE -17.35
Consensus MFE -14.79
Energy contribution -15.02
Covariance contribution 0.22
Combinations/Pair 1.09
Mean z-score -2.09
Structure conservation index 0.85
SVM decision value 0.99
SVM RNA-class probability 0.895446
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19942177 90 + 20766785
UUGAAUUUGCAAACAAAUUUACACGAAUUUGAUUAUUAUUAUGAUGGCAAUUUGCAAAAAUGUCAUCCUUCAAGCAAAAAGGCAAAAGGA
.(((.(((((((((((((((....)))))))(((((....))))).....))))))))....)))(((((...((......))..))))) ( -16.80)
>DroPse_CAF1 24740 88 + 1
UUGAAUUUGCUAACAAAUUUACACGAAUUUGAUUAUUAUUAUGAUGGCAAUUUGCAAAAAUGUCAUCCCUCAAGCAAGA--GCAAACGAA
(((..((((((..(((((((....)))))))...........(((((((.(((....)))))))))).....)))))).--.)))..... ( -18.50)
>DroSec_CAF1 25294 90 + 1
UUGAAUUUGCAAACAAAUUUACACGAAUUUGAUUAUUAUUAUGAUGGCAAUUUGCAAAAAUGUCAUCCUUCAAGCGAAAAGGCAAAAGGA
.(((.(((((((((((((((....)))))))(((((....))))).....))))))))....)))(((((...((......))..))))) ( -17.00)
>DroEre_CAF1 24344 90 + 1
UUGAAUUUGCAAACAAAUUUACACGAAUUUGAUUAUUAUUAUGAUGGCAAUUUGCAAAAAUGUCAUCCUUCGAGCAAAAAGGCAAAAGGA
.(((.(((((((((((((((....)))))))(((((....))))).....))))))))....)))(((((...((......))..))))) ( -16.80)
>DroAna_CAF1 23210 82 + 1
UUGAAUUUGCAAACAAAUUUACACGAAUUUGAUUAUUAUUAUGAUGGCAAUUUGCAAAAAUGUCAUCUUUCAAGC--------AAAAGGA
.....(((((...(((((((....)))))))...........(((((((.(((....))))))))))......))--------))).... ( -16.50)
>DroPer_CAF1 24582 88 + 1
UUGAAUUUGCUAACAAAUUUACACGAAUUUGAUUAUUAUUAUGAUGGCAAUUUGCAAAAAUGUCAUCCCUCAAGCAAGA--GCAAACGAA
(((..((((((..(((((((....)))))))...........(((((((.(((....)))))))))).....)))))).--.)))..... ( -18.50)
>consensus
UUGAAUUUGCAAACAAAUUUACACGAAUUUGAUUAUUAUUAUGAUGGCAAUUUGCAAAAAUGUCAUCCUUCAAGCAAAA__GCAAAAGGA
.....(((((...(((((((....)))))))...........(((((((.(((....))))))))))......)))))............ (-14.79 = -15.02 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:09 2006