Locus 6352

Sequence ID 2R_DroMel_CAF1
Location 19,918,346 – 19,918,436
Length 90
Max. P 0.831487
window10150

overview

Window 0

Location 19,918,346 – 19,918,436
Length 90
Sequences 4
Columns 90
Reading direction forward
Mean pairwise identity 96.11
Mean single sequence MFE -36.33
Consensus MFE -34.05
Energy contribution -33.55
Covariance contribution -0.50
Combinations/Pair 1.15
Mean z-score -1.81
Structure conservation index 0.94
SVM decision value 0.72
SVM RNA-class probability 0.831487
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19918346 90 + 20766785
CGCCCGCCCCGCCCCCUGCCUCCGCACAAGUGGGCGCUGCUGUGGGCGUGGCCCAUUAGGAGCGCCUAGUUUGCCACAUUACUAUCCUGA
.((((((..((((((.(((....)))...).))))).....))))))(((((..((((((....))))))..)))))............. ( -36.80)
>DroSec_CAF1 7741 90 + 1
CGCCCGCCCCGCCCCCUGCCUCCGCACAAGUGGGCGCUGCUGUGGGCGUGGCCCAUUAGGAGCGCCUAGUUUGCCACAUUACUAUCCUGA
.((((((..((((((.(((....)))...).))))).....))))))(((((..((((((....))))))..)))))............. ( -36.80)
>DroSim_CAF1 9122 90 + 1
CGCCCGCCCCGCCCCCUGCCUCCGCACAAGUGGACGCUGCUGUGGGCGUGGCCCAUUAGGAGCGCCUAGUUUGCCACAUUACUAUCCUGA
.((((((...((.....((.(((((....))))).)).)).))))))(((((..((((((....))))))..)))))............. ( -36.40)
>DroYak_CAF1 7788 90 + 1
CGCCCGCCCCGCCCUCUGCCUUCGCACAAGUGGGCGUUGUUGUGGGCGUGGCCCAUUAGGAGCGCCUAGCCUGCCACAUUACUAUCCUGA
.((((((..(((((.((((....))...)).))))).....))))))(((((...(((((....)))))...)))))............. ( -35.30)
>consensus
CGCCCGCCCCGCCCCCUGCCUCCGCACAAGUGGGCGCUGCUGUGGGCGUGGCCCAUUAGGAGCGCCUAGUUUGCCACAUUACUAUCCUGA
.((((((...((.....((.(((((....))))).)).)).))))))(((((..((((((....))))))..)))))............. (-34.05 = -33.55 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:59 2006