| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,196,032 – 3,196,145 |
| Length | 113 |
| Max. P | 0.747913 |
| Location | 3,196,032 – 3,196,145 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 77.36 |
| Mean single sequence MFE | -33.27 |
| Consensus MFE | -22.10 |
| Energy contribution | -22.77 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.747913 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3196032 113 - 20766785 ACUAAUAGUAUAUUGUUUCUUCCGCGGAUUAGGUGCCAUUCAUUUGGCUGGGCCCAUAGCCAAGGUAUCCAAGGGCCUGUGCAAACUGGCUUUGGCCCACUGCGGACUAACUU ..............(((...(((((((.......((((......))))((((((...(((((((((........))))((....)))))))..)))))))))))))..))).. ( -41.50) >DroVir_CAF1 3962 110 - 1 ACUAAUG-UCAACUU--CUUUUAUUUCAUUAGGCGCCAUACAUCUGGCUGGGCCCAUAGCCAAGGUAUCGAAGGGUCUGUGCAAAUUGGCGCUCUCCCAUUGCGGACUCACCU .((((((-.......--.........)))))).(((.((((...((((((......))))))..))))....(((...((((......))))...)))...)))......... ( -28.49) >DroEre_CAF1 3193 112 - 1 ACUAAUAGUAUAUCGUUU-UUCUGUGAACAAGGUGCCAUUCAUUUGGCUGGGCCCAUAGCCAAGGUAUCCAAGGGUCUGUGCAAACUGGCCUUGGCCCACUGUGGACUAACUU .(((.((((.....((((-......))))..((.(((.....((((((((......)))))))).......((((((.((....)).))))))))))))))))))........ ( -31.40) >DroYak_CAF1 3385 112 - 1 UCUAAUAAUAUAUCGUUU-CCCUUUGAAUUAGGUGCCAUUCAUUUGGCUGGGCCAAUAGCCAAGGUAUCCAAGGGCCUGUGCAAACUGGCCCUGGCCCACUGUGGACUAACUU ..............((((-((.............((((......))))((((((....((....)).....((((((.((....)).))))))))))))....)))..))).. ( -34.80) >DroMoj_CAF1 3852 110 - 1 AUUAAUA-CAAAUCU--CUUUCAUUCGAUCAGGCGCUAUACAUUUGGCUGGACCCAUUGCCAAGGUAUCAAAGGGCCUCUGCAAAUUGGCCCUCGCCCAUUGUGGACUCACCU .......-.......--...((...((((..((((..((((.((((((((....))..))))))))))...((((((..........)))))))))).))))..))....... ( -27.80) >DroPer_CAF1 3569 110 - 1 AGCAUUUGUGUUUC---UUUUCUGCUGCUUAGGUGCCAUACAUCUGGCCGGACCCAUAGCCAAGGUGUCGAAGGGUCUGUGCAAGCUGGCCCUGGCCCACUGCGGCCUCACCU ..............---......(((((...((.(((..(((((((((.(....)...))).))))))...((((((.((....)).)))))))))))...)))))....... ( -35.60) >consensus ACUAAUAGUAUAUCG__UUUUCUGUGGAUUAGGUGCCAUACAUUUGGCUGGGCCCAUAGCCAAGGUAUCCAAGGGCCUGUGCAAACUGGCCCUGGCCCACUGCGGACUAACCU ...............................((.(((.....((((((((......)))))))).......((((((.((....)).)))))))))))............... (-22.10 = -22.77 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:19 2006