Locus 634

Sequence ID 2R_DroMel_CAF1
Location 3,195,773 – 3,195,882
Length 109
Max. P 0.584231
window1131

overview

Window 1

Location 3,195,773 – 3,195,882
Length 109
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.78
Mean single sequence MFE -28.52
Consensus MFE -22.88
Energy contribution -23.13
Covariance contribution 0.25
Combinations/Pair 1.21
Mean z-score -1.18
Structure conservation index 0.80
SVM decision value 0.10
SVM RNA-class probability 0.584231
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3195773 109 + 20766785
UGCUUACAUUUUCCAGCGUGAUGUCAGUCGAGGCCAGAUCCAAGUGCUCCAGCACAUUGGGUUGAGCCAGGAAAUUGUGCAAAUUCUGCAAAAAU------UGAAAUAUUUUA-----CU
(((..(((.(((((....((((....)))).(((..(((((((((((....)))).)))))))..))).))))).))))))..............------............-----.. ( -31.60)
>DroVir_CAF1 3707 120 + 1
CACUUACAUUUUCCAGCAUAAUAUCAGUCGAUGCCAGAUCCAGAUGCUCCAGCACAUUAGGUUGAGCCAGGAAAUUGUGCAGAUUCUGUAAAAAAAUUCGGUUGAAUAUAUUCACCUUCU
...(((((...((..((((((((((....)))......(((....((((.(((.......)))))))..))).))))))).))...)))))........(((.(((....)))))).... ( -21.50)
>DroPse_CAF1 3291 106 + 1
UACAUACAUUCUCCAGCAUGAUGUCAGUCGAGGCCAGGUCCAGGUGCUCCAGCACAUUGGGUUGAGCCAGGAAAUUGUGCAGAUUCUGCGAAA---------CAAAUAGCAGA-----UU
...............(((..((.....((..(((..(..((((((((....)))).))))..)..)))..)).))..)))....(((((....---------......)))))-----.. ( -31.20)
>DroYak_CAF1 3135 109 + 1
AGCUUACAUUUUCCAGCGUGAUGUCAGUCGAGGCCAGAUCUAAGUGCUCCAGUACAUUGGGUUGAGCCAGAAAGUUGUGCAAAUUCUGCAAUUAU------UUAAAUAUUUUA-----UU
.(((.(((((.........))))).)))...(((..(((((((((((....)))).)))))))..)))...((((..((((.....))))...))------))..........-----.. ( -23.90)
>DroAna_CAF1 3173 110 + 1
AACAUACAUUUUCCAAUGUGAUGUCAGUCGAGGCCAGGUCCAAGUGCUCCAGCACAUUGGGUUGAGCCAGGAAGUUGUGCAGAUUCUGAAAAGAA------AUGAAGAAUUUA----AUU
....((((.(((((....((((....)))).(((..(..((((((((....)))).))))..)..))).))))).)))).(((((((....(...------.)..))))))).----... ( -31.70)
>DroPer_CAF1 3314 106 + 1
UACAUACAUUCUCCAGCAUGAUGUCAGUCGAGGCCAGGUCCAGGUGCUCCAGCACAUUGGGUUGAGCCAGGAAAUUGUGCAGAUUCUGCGAAA---------CAAAUAGCAGA-----UU
...............(((..((.....((..(((..(..((((((((....)))).))))..)..)))..)).))..)))....(((((....---------......)))))-----.. ( -31.20)
>consensus
UACAUACAUUUUCCAGCAUGAUGUCAGUCGAGGCCAGAUCCAAGUGCUCCAGCACAUUGGGUUGAGCCAGGAAAUUGUGCAGAUUCUGCAAAAA_______UUAAAUAUUUUA_____UU
.....(((.(((((....((((....)))).(((..(((((((((((....)))).)))))))..))).))))).)))(((.....)))............................... (-22.88 = -23.13 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:18 2006