Locus 6331

Sequence ID 2R_DroMel_CAF1
Location 19,845,909 – 19,846,001
Length 92
Max. P 0.567321
window10114

overview

Window 4

Location 19,845,909 – 19,846,001
Length 92
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 83.11
Mean single sequence MFE -30.32
Consensus MFE -20.95
Energy contribution -21.28
Covariance contribution 0.33
Combinations/Pair 1.04
Mean z-score -1.76
Structure conservation index 0.69
SVM decision value 0.07
SVM RNA-class probability 0.567321
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19845909 92 + 20766785
GGCACGACUGAUUGGGAUGCCUGGUGAAGCGACGUGCGCAGAAUUGACAUUUUGUGUGUGCAUUU----------------GUGCAUUUGUGCAUUUGCGCACAGUGG
.(((((.((.((..((...))..))..))...)))))(((((((....)))))))(((((((..(----------------(..(....)..))..)))))))..... ( -32.90)
>DroSec_CAF1 88025 84 + 1
GGCACGACUGAUUGGGAUGCCUGGUGAAGCGACGUGCGCAGAAUUGACAUUUUGUGUGUGCAUUU------------------------GUGCAUUUGCGCACAGUGG
..((((..(.((..((...))..)).)..)...(((((((((....((((.....))))(((...------------------------.))).))))))))).))). ( -26.60)
>DroSim_CAF1 64256 84 + 1
GGCACGACUGAUUGGGAUGCCUGGUGAAGCGACGUGCGCAGAAUUGACAUUUUGUGUGUGCAUUU------------------------GUGCAUUUGCGCACAGUGG
..((((..(.((..((...))..)).)..)...(((((((((....((((.....))))(((...------------------------.))).))))))))).))). ( -26.60)
>DroEre_CAF1 89520 100 + 1
GCCACGACUGAUUGGGAUGCCUGGUGAAGCGACGUGCGCAGAAUUGACAUUUUGUGUGUGCAUCU--------GUGCAUUUGUGCAUUUGUACAUUUGUGCACAGUGG
....((..(.((..((...))..)).)..)).((..((((((((....))))))))..))((.((--------((((((.(((((....)))))...)))))))))). ( -35.20)
>DroYak_CAF1 87446 108 + 1
GGCACGACUGAUUGGGAUGCCUGGUGAAGCGACGUGCGCAGAAUUGACAUUUUGUGUGUGCAUUUGUACUUUUGUGCAUUUGUACAUUUGUACAUUUGUGCACAGUGG
.(((((.((.((..((...))..))..))...)))))(((((((....)))))))(((..((..(((((...(((((....)))))...)))))..))..)))..... ( -37.80)
>DroAna_CAF1 84912 76 + 1
GGCACGACUGAUUGGGAUGCCUGGUGGAGCGACGUGCGCAGAAUUGACAUUUUGUGUGUGCAUUU--------------------------------GUGCACAGUGG
..((((..(.((..((...))..)).)..)...(((((((((..((((((.....)))).)))))--------------------------------)))))).))). ( -22.80)
>consensus
GGCACGACUGAUUGGGAUGCCUGGUGAAGCGACGUGCGCAGAAUUGACAUUUUGUGUGUGCAUUU________________________GUGCAUUUGCGCACAGUGG
....(.((((((..((...))..)).....(.((..((((((((....))))))))..)))............................((((....)))).)))).) (-20.95 = -21.28 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:25 2006