Locus 6329

Sequence ID 2R_DroMel_CAF1
Location 19,844,597 – 19,844,716
Length 119
Max. P 0.677702
window10111

overview

Window 1

Location 19,844,597 – 19,844,716
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 87.20
Mean single sequence MFE -26.12
Consensus MFE -18.55
Energy contribution -19.80
Covariance contribution 1.25
Combinations/Pair 1.25
Mean z-score -1.74
Structure conservation index 0.71
SVM decision value 0.30
SVM RNA-class probability 0.677702
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19844597 119 + 20766785
AAGUACGCUUCUUUAUUGACUCAUCGCAGCAGAUAAGUUCAUACUUUUCACAAAACCCAGUUAGCCAAAACUCCGGUGGUUUCCACCUAAUUGCAGUGUACUUAACACCAUUUAAA-UGC
(((((((((((......))......((((..((.((((....)))).)).........................(((((...)))))...))))))))))))).............-... ( -23.10)
>DroSec_CAF1 86708 119 + 1
AAGUACGCUUCUGUAUUGACUCAUUGCCGCAGAUAAGUUCACACUUUUCACAAAACCCAAUUAGCCAAAACUCCGGCGAUUUCCACCUAAUUGCAGUGUACUUAACACCAUUUAAA-UGC
(((((((((...(((.((...)).))).(((((.((((....)))).))..............(((........)))..............)))))))))))).............-... ( -20.10)
>DroEre_CAF1 88282 118 + 1
AAGUACGCUGCUGUAUUGACUCAUCGCCGCAA-UGCA-UCAUGCGCUUCCCAAAACCCAGUUAGCGAAAACUCCGGCUAUUUCCACCUAAUUGCAGUGUACUUAACACCAUUUAAAGUGC
((((((((((((((((((.(........))))-))))-.....((((..(.........)..))))..........................)))))))))))..(((........))). ( -26.70)
>DroYak_CAF1 86087 120 + 1
GAGCACGCUGCUGCAUUGACUAAUCGCCGCAGACGAAUUCAUACUUUUCACAAAGCCCAGUUAGCGAAAACUGCGGCGAUUUCCACCUAAUUGCAGUGUACUUAACACCAUUUAGAGUGC
(((.(((((((..........(((((((((((..(((.........))).....((.......)).....)))))))))))...........))))))).)))..(((........))). ( -34.60)
>consensus
AAGUACGCUGCUGUAUUGACUCAUCGCCGCAGAUAAAUUCAUACUUUUCACAAAACCCAGUUAGCCAAAACUCCGGCGAUUUCCACCUAAUUGCAGUGUACUUAACACCAUUUAAA_UGC
(((((((((((...........(((((((..((.((((....)))).)).........((((......)))).)))))))............)))))))))))................. (-18.55 = -19.80 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:22 2006