Locus 6328

Sequence ID 2R_DroMel_CAF1
Location 19,841,870 – 19,841,968
Length 98
Max. P 0.761764
window10110

overview

Window 0

Location 19,841,870 – 19,841,968
Length 98
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.10
Mean single sequence MFE -28.11
Consensus MFE -18.97
Energy contribution -20.41
Covariance contribution 1.44
Combinations/Pair 1.05
Mean z-score -1.42
Structure conservation index 0.67
SVM decision value 0.50
SVM RNA-class probability 0.761764
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19841870 98 + 20766785
CGCGUCCGUCGCCGACGAGUGGUAAAUUGUAACUGUGACAAAACGCGAACGCGAACGCGGCAAAGU--------GAAAAAGUCUUUGGCGCAG-CGAC-------------GCAGCCGAA
.(((((((((((..((((........))))....)))))....(((....)))...(((.(((((.--------........))))).))).)-.)))-------------))....... ( -31.90)
>DroPse_CAF1 83494 93 + 1
CGCGUCCGUCGCUUACAAUUGGUAAAUUGUAACUGUGACAAAAUG------CGAACGCGGCACAGU--------GAAAAAGUCUUUGGCGCAGGCCAA-------------GCAGCAGCA
(((((..(((((((((((((....))))))))..)))))...)))------))...((.((.....--------((.....))((((((....)))))-------------)..)).)). ( -27.50)
>DroWil_CAF1 181270 78 + 1
CGCGACCGUCGCUUACAAUUGGUAAAUUGUAACUGUGACAAAAUG------CGAACGCGGCAAAGU--------GAAAAAGUCUUUGGCGCA----------------------------
((((...(((((((((((((....))))))))..)))))....))------))...(((.(((((.--------........))))).))).---------------------------- ( -26.30)
>DroYak_CAF1 83131 106 + 1
CGCGUCCGUCGCCGACGAGUGGUAAAUUGUAACUGUGACAAAACGCGAACGCGAACGCGGCAAAGUGAAUAAGUGAAAAAGUCUUUGGCGCAG-CGAC-------------GCAGGCGAA
.(((((((((((..((((........))))....)))))....(((....)))...(((.(((((.................))))).))).)-.)))-------------))....... ( -31.23)
>DroAna_CAF1 80306 105 + 1
UGCGUCCGUAUCUUACAAUUGGUAAAUUGUAACUGUGACAAAAUG------CGAACGCGGCAAAGU--------GAAAAAGUCUUUGGCGCAG-CAACAAAACGACAAGCAGCGGCCUGA
(((((.(((((.((((((((....))))))))..........)))------)).))(((.(((((.--------........))))).))).)-)).........((.((....)).)). ( -24.20)
>DroPer_CAF1 83036 93 + 1
CGCGUCCGUCGCUUACAAUUGGUAAAUUGUAACUGUGACAAAAUG------CGAACGCGGCACAGU--------GAAAAAGUCUUUGGCGCAGGCCAA-------------GCAGCAGCA
(((((..(((((((((((((....))))))))..)))))...)))------))...((.((.....--------((.....))((((((....)))))-------------)..)).)). ( -27.50)
>consensus
CGCGUCCGUCGCUUACAAUUGGUAAAUUGUAACUGUGACAAAAUG______CGAACGCGGCAAAGU________GAAAAAGUCUUUGGCGCAG_CCAC_____________GCAGCCGAA
.((....(((((.(((((((....)))))))...))))).................(((.(((((.................))))).)))....................))....... (-18.97 = -20.41 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:21 2006