Locus 6301

Sequence ID 2R_DroMel_CAF1
Location 19,749,451 – 19,749,547
Length 96
Max. P 0.977053
window10072

overview

Window 2

Location 19,749,451 – 19,749,547
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 96.56
Mean single sequence MFE -20.72
Consensus MFE -19.64
Energy contribution -19.40
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -1.58
Structure conservation index 0.95
SVM decision value 1.78
SVM RNA-class probability 0.977053
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19749451 96 - 20766785
AAAUGUCAGCUCGAAAUUGUUAUGAAAUUUUCGCUGGCAUUAUUAUGCAUUUUGCUGAUAUAAACAAAUUAGUUUUUGCUGUGCUCCGCCCUUUCC
.(((((((((..((((((.......)))))).))))))))).....(((....((((((........))))))...)))................. ( -21.00)
>DroSec_CAF1 2216 96 - 1
AAAUGUCAGCUCGAAAUUGUUAUGAAAUUUUCGCUGGCAUUAUUAUGCAUUUUGCUGAUAUAAACAAAUUAGUUUUUGCUGUGCUCCGCCCUUUCC
.(((((((((..((((((.......)))))).))))))))).....(((....((((((........))))))...)))................. ( -21.00)
>DroSim_CAF1 4706 96 - 1
AAAUGUCAGCUCGAAAUUGUUAUGAAAUUUUCGCUGGCAUUAUUAUGCAUUUUGCUGAUAUAAACAAAUUAGUUUUUGCUGUGCUCCGCCCUUUCC
.(((((((((..((((((.......)))))).))))))))).....(((....((((((........))))))...)))................. ( -21.00)
>DroEre_CAF1 2326 96 - 1
AAAUGUCAGCUCCAAGUUGUUAUGAAAUUUUCGCUGGCAUUAUUGUGCAUUUUGCUGAUAUAAACAAAUUAGUUUUUGCUGUGCUCCGCCUGUGCC
.(((((((((...(((((.......)))))..))))))))).....(((....((((((........))))))...))).(..(.......)..). ( -21.20)
>DroYak_CAF1 4903 96 - 1
AAAUGUCAGCUCCAAGUUGUUAUGAAAUUUUCGCUGGCAUUAUUAUGCAUUUUGCUGAUAUAAACAAAUUAGUUUUUGCUGUGCUCCGCCUCUUCC
.(((((((((...(((((.......)))))..))))))))).....(((....((((((........))))))...)))................. ( -19.40)
>consensus
AAAUGUCAGCUCGAAAUUGUUAUGAAAUUUUCGCUGGCAUUAUUAUGCAUUUUGCUGAUAUAAACAAAUUAGUUUUUGCUGUGCUCCGCCCUUUCC
.(((((((((...(((((.......)))))..))))))))).....(((....((((((........))))))...)))................. (-19.64 = -19.40 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:45 2006