Locus 6298

Sequence ID 2R_DroMel_CAF1
Location 19,747,954 – 19,748,055
Length 101
Max. P 0.761263
window10068

overview

Window 8

Location 19,747,954 – 19,748,055
Length 101
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 92.74
Mean single sequence MFE -38.92
Consensus MFE -31.35
Energy contribution -32.60
Covariance contribution 1.25
Combinations/Pair 1.00
Mean z-score -1.94
Structure conservation index 0.81
SVM decision value 0.50
SVM RNA-class probability 0.761263
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19747954 101 + 20766785
CUCUGGGGGUAAUUAUGCAGCCAGGGGACCCAACUCGCCCCAACUCUUUGCGGGAGUAGGGUUUUCGUUUCGGUUUCGACAUGGGUAUCGGGAUCGGGAAU
((((((..(((....)))..))))))(((((.((((.((.(((....))).)))))).)))))....(..((((..(((........)))..))))..).. ( -38.30)
>DroSec_CAF1 753 91 + 1
CUCUGGGGGUAAUUAUGCAGCCAGGGGACCCA----------ACUCUUUGCGGGAGUAGGGUUUUCGUUUCGGUUUCGACAUGGGGAUCGGGAUCGGGAAU
((((((..(((....)))..))))))(((((.----------(((((.....))))).)))))....(..((((..(((........)))..))))..).. ( -35.50)
>DroSim_CAF1 3248 101 + 1
CUCUGGGGGUAAUUAUGCAGCCAGGGGACCCAACUCGCCCCAACUCUUUGCGGGAGUAGGGUUUUCGUUUCGGUUUCGACAUGGGGAUCGGGAUCGGGAAU
((((((..(((....)))..))))))(((((.((((.((.(((....))).)))))).)))))....(..((((..(((........)))..))))..).. ( -38.30)
>DroEre_CAF1 810 101 + 1
CUCUGGGGGUAAUUAUGCAGCCAGGGGACCCAACUCGCCCCGACUCUUUGCGGGAGUAGGGUUUUCGUUUCGGUUUCGACAUGGGGAUCGGGUUGGGGAGU
((((((..(((....)))..))))))..((((((((((((((.(.....))))).))..((((..(((.(((....))).)))..)))))))))))).... ( -43.60)
>consensus
CUCUGGGGGUAAUUAUGCAGCCAGGGGACCCAACUCGCCCCAACUCUUUGCGGGAGUAGGGUUUUCGUUUCGGUUUCGACAUGGGGAUCGGGAUCGGGAAU
((((((..(((....)))..))))))..(((.......(((.(((((.....))))).))).....(((((((((((......))))))))))).)))... (-31.35 = -32.60 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:41 2006