| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,746,097 – 19,746,196 |
| Length | 99 |
| Max. P | 0.934851 |
| Location | 19,746,097 – 19,746,196 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.25 |
| Mean single sequence MFE | -28.00 |
| Consensus MFE | -24.69 |
| Energy contribution | -26.30 |
| Covariance contribution | 1.61 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.934851 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19746097 99 + 20766785 UU--UUUGCGGCUUUCGUUGGCAGGAGUUUU-------------------UGUGUGUUGGCAAGUGUUUGGCUUUUAAUUUGGCACGAAACUUGAAAAAGUAAUCUUGAAACGAAAGCAA ..--......(((((((((..(((((...((-------------------((((((((((.((((.....)))))))))...)))))))((((....))))..))))).))))))))).. ( -30.10) >DroSim_CAF1 1401 98 + 1 UU---UUGCGGCUGUUGUUGGCAGGAGUUUU-------------------UGUGUGUUGGCAAGUGUUUGGCUUUUAAUUUGGCACGAAACUUGAAAAAGUAAUCUUGAAACGAAAGCAA ..---.....(((.(((((..(((((...((-------------------((((((((((.((((.....)))))))))...)))))))((((....))))..))))).))))).))).. ( -24.50) >DroYak_CAF1 1345 120 + 1 UUUUUUUGCGGCUUUUGUUGGCAGGAGUUUUUUGUGUUUUUGUGUGCGUUUUUGUGUUGGCAAGUGUUUGGCUUUUAAUUUGGCACGAAACUUGAAAAAGUAAUCUUGAAACGAAAGCAA ..........(((((((((..(((((....((((((((.(((...((...(((((....)))))......))...)))...))))))))((((....))))..))))).))))))))).. ( -29.40) >consensus UU__UUUGCGGCUUUUGUUGGCAGGAGUUUU___________________UGUGUGUUGGCAAGUGUUUGGCUUUUAAUUUGGCACGAAACUUGAAAAAGUAAUCUUGAAACGAAAGCAA ..........(((((((((..(((((..........................(((((..(.((((.....)))).....)..)))))..((((....))))..))))).))))))))).. (-24.69 = -26.30 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:34 2006