Locus 6291

Sequence ID	2R_DroMel_CAF1
Location	19,744,066 – 19,744,158
Length	92
Max. P	0.685455

overview

Window 7

Location	19,744,066 – 19,744,158
Length	92
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	92.85
Mean single sequence MFE	-31.46
Consensus MFE	-24.82
Energy contribution	-25.62
Covariance contribution	0.80
Combinations/Pair	1.00
Mean z-score	-1.62
Structure conservation index	0.79
SVM decision value	0.32
SVM RNA-class probability	0.685455
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19744066 92 + 20766785
CUUUUUGCCGGAUUUGUGACAGGCUUCAUUGCCAGAAAAUCUGCUGUGCGACUGUGCGACUGCGAUAAGCGCAGCUGCCGGAGAUUCGGAUA-
.......((((((((.((.(((((......))).........(((((((.....(((....)))....))))))))).)).))))))))...- ( -32.30)
>DroSec_CAF1 52622 89 + 1
CUUUUUGCCGGAUUUGUGACAGGCUUCAUUGCCAGAAAAUCU---GUGGGGCUGUGCGACUGCGAUAAGCGCAGCUGCCGGAGAUUCGGAUA-
.......(((((((.......(((......)))......(((---(.(.((((((((...........)))))))).))))))))))))...- ( -32.30)
>DroSim_CAF1 54701 89 + 1
CUUUUUGCCGGAUUUGUGACAGGCUUCAUUGCCAGAAAAUCU---GUGGGGCUGUGCGACUGCGAUAAGCGCAGCUGCCGGAGAUUCGGAUA-
.......(((((((.......(((......)))......(((---(.(.((((((((...........)))))))).))))))))))))...- ( -32.30)
>DroEre_CAF1 53474 90 + 1
CUUUUUGCCGGAUUUGUGACAGGCUUCAUUGCCAGAAAAUUU---GUGGGGCUGUGCGACUGCGAUAAGCGCAGCUGGCGGAGAUUCUGGUUC
......(((............)))......(((((((..(((---((.((.((((((...........)))))))).)))))..))))))).. ( -29.90)
>DroYak_CAF1 53565 90 + 1
CUUUUUGCCGGAUUUGUGACAGGCUUCAUUGCCAGAAAAUCU---AUGUGCCUGUGCGACUGCGAUAAGCGCAGCUGGCGGAGAUUGGGAUGC
.((((((((((..((((.((((((..(((.............---))).))))))))))(((((.....)))))))))))))))......... ( -30.52)
>consensus
CUUUUUGCCGGAUUUGUGACAGGCUUCAUUGCCAGAAAAUCU___GUGGGGCUGUGCGACUGCGAUAAGCGCAGCUGCCGGAGAUUCGGAUA_
.......((((((((.((...(((......)))................((((((((...........))))))))..)).)))))))).... (-24.82 = -25.62 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:30 2006