| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,168,396 – 3,168,506 |
| Length | 110 |
| Max. P | 0.511707 |
| Location | 3,168,396 – 3,168,506 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 79.55 |
| Mean single sequence MFE | -35.72 |
| Consensus MFE | -21.11 |
| Energy contribution | -21.92 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.59 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.511707 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3168396 110 - 20766785 AU---UUUAAUCAUCGUUGGCUUCGUCCACUUUUCACUGACUGCCCAAAGCCACUUUGCCGUUUGGGUGUCGGUGGCAGCCGGCGCCAUUUCCUUCAGUUUGCAGUCGCUGAA ..---.........((((((((.((....)....(((((((.(((((((((......))..))))))))))))))).)))))))).........(((((........))))). ( -33.90) >DroPse_CAF1 50791 113 - 1 UUCACAUCGAUGGGCGGUGGAUUUGUCCACUUUUCACUGACUGCCCAAAGCCAUUUGGCUGUCUGUGUGUCAGUGCCAGCUGGCGCUACUUCUUUGGGCUGGCAGUCACUGAA ..(((((.(((((((((((((....))).(........))))))))..((((....))))))).)))))((((((.(.((..((.(((......)))))..)).).)))))). ( -44.60) >DroEre_CAF1 57256 110 - 1 AU---UUUAAUCAUUGCUGGCUUCGUCCACUUUUCACUGACUGCCCAUAGCCAUUUUGCCGUUUGGGUGUCGGUGGCAGCCGGCGACAUCUCCUUUAGCUUGCAGUCGCUGAA ..---........(((((((((.((....)....(((((((.(((((..((......))....))))))))))))).)))))))))........(((((........))))). ( -35.00) >DroYak_CAF1 58046 110 - 1 AU---CUUAAUCAUUGCUGGCUUCGUCCACUUUUCACUGACUGCCCAGAGCCACUUUGCCGUUUGGGUGUCGGUGGCAGCCGGCGCCAUUUCCUUGAGCUUGCAGUCGCUAAA ..---..........(((((((.((....)....(((((((.(((((((((......))..))))))))))))))).)))))))((((......)).))..((....)).... ( -33.90) >DroAna_CAF1 52190 110 - 1 AU---AUCGAUGGUCGCUGGUUUAGUCCACUUGUCACUGACUGCCCAAAGCCACUUGGCAGUUUGAACGUCCAAGGCCGCCGGAGCCACUUCCUUGAUUUUGCAGUCGCUAAA .(---(.(((((((.(((((......)))(((((((..(((((((.((......)))))))))))).....)))))).)))((((....))))...........)))).)).. ( -25.10) >DroPer_CAF1 50882 113 - 1 UUCACAUCGAUUGGCGGUGGAUUUGUCCACUUUUCACUGACUGCCCAAAGCCAUUUGGCUGUCUGUGUGUCAGUGCCAGCUGGCGCUACUUCUUUGGGCUGGCAAUCACUGAA ........(((((.(((((((....))))))...........((((((((((....))))....((((((((((....)))))))).))....)))))).).)))))...... ( -41.80) >consensus AU___AUCAAUCAUCGCUGGCUUCGUCCACUUUUCACUGACUGCCCAAAGCCACUUGGCCGUUUGGGUGUCGGUGGCAGCCGGCGCCACUUCCUUGAGCUUGCAGUCGCUGAA .................(((......)))....(((.(((((((.....((......)).......((((((((....))))))))...............))))))).))). (-21.11 = -21.92 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:10 2006