Locus 6263

Sequence ID 2R_DroMel_CAF1
Location 19,662,387 – 19,662,507
Length 120
Max. P 0.587743
window10020

overview

Window 0

Location 19,662,387 – 19,662,507
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 83.06
Mean single sequence MFE -23.43
Consensus MFE -19.21
Energy contribution -19.10
Covariance contribution -0.11
Combinations/Pair 1.09
Mean z-score -1.49
Structure conservation index 0.82
SVM decision value 0.11
SVM RNA-class probability 0.587743
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19662387 120 + 20766785
GUCGGCGGCGAAGUAAACAAAAUAUCGCAAAACGUGCGCGCCAACAAAAAAGCGAAAUAAUCGAAAUAAGGGAAAAAUUCGCCAUAAAUUUUCCCGACAUCCCGAUACCCCCUUUCCCCC
(((((.((((..(....).......((((.....))))))))..........(((.....)))......(((((((.((......)).)))))))......))))).............. ( -22.70)
>DroSim_CAF1 561 120 + 1
GUCGGCGGCGAAGUAAACAAAACAUCGCAAAACGUGCGCGCCAGCAAAAAAGCGAAAUAAUCGAAAUAAGGGAAAAAUUCGCCAUAAAUUUUCCCGACAUCCCCAUAUCCCGAUACCCCC
(((((.((.((.((..........((((......(((......))).....))))..............(((((((.((......)).))))))).)).)).)).....)))))...... ( -23.80)
>DroYak_CAF1 629 104 + 1
GUUGGCGGCGAAGUAAACAAAACAUCGCAAAACGUGCGCGCCAACAAAAA---------AUUUAAAUAAGGGAAAAAUUCGCCAUAAAUUUUCCCGAGAACCCC-------CGCCCUCCC
(((((((((((.((.......)).))))....(....)))))))).....---------..........(((((((.((......)).)))))))(((......-------....))).. ( -23.80)
>consensus
GUCGGCGGCGAAGUAAACAAAACAUCGCAAAACGUGCGCGCCAACAAAAAAGCGAAAUAAUCGAAAUAAGGGAAAAAUUCGCCAUAAAUUUUCCCGACAUCCCCAUA_CCCCAUACCCCC
(((((((((((.((.......)).))))....(....)))))...........................(((((((.((......)).))))))))))...................... (-19.21 = -19.10 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:54 2006