Locus 6252

Sequence ID 2R_DroMel_CAF1
Location 19,627,744 – 19,627,839
Length 95
Max. P 0.730498
window10006

overview

Window 6

Location 19,627,744 – 19,627,839
Length 95
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 92.04
Mean single sequence MFE -43.75
Consensus MFE -42.25
Energy contribution -41.92
Covariance contribution -0.33
Combinations/Pair 1.13
Mean z-score -0.96
Structure conservation index 0.97
SVM decision value 0.42
SVM RNA-class probability 0.730498
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19627744 95 - 20766785
UGCUACUGGUGGUGGGCGGCAGGAGCAGCUUGCGCUCGCUGCUCAGCUGGCCGAGACUGCUGGAGUCCGCGAGGUCGAGGCUGGAGCUGCUGCUG
.((((....)))).(((((((((((((((........)))))))..(..(((..((((..(((...)))...))))..)))..)..)))))))). ( -45.00)
>DroSec_CAF1 2181 95 - 1
UGCUGCUGGUGGUGGGCGGCAGGAGCAGCUUGCGCUCGCUGCUCAGCUGGCCGAGACUGCUGGAGUCCGCGAGGUCGAGGCUGGAGCUGCUGCUG
..(..(.....)..)((((((((((((((........)))))))..(..(((..((((..(((...)))...))))..)))..)..))))))).. ( -43.70)
>DroSim_CAF1 2280 95 - 1
UGCUGCUGGUGGUGGGCGGCAGGAGCAGCUUGCGCUCGCUGCUCAGCUGGCCGAGACUGCUGGAGUCCGCGAGGUCGAGGCUGGAGCUGCUGCUG
..(..(.....)..)((((((((((((((........)))))))..(..(((..((((..(((...)))...))))..)))..)..))))))).. ( -43.70)
>DroEre_CAF1 1213 89 - 1
UGCU------GGUGGGCGGCAGGAGCAGCUUGCGCUCGCUGCUCAGCUGGCCGAGACUGCUGGAGUCCGCGAGGUCGAGGCUAGAGCUGCUGCUG
....------....(((((((((((((((........)))))))..((((((..((((..(((...)))...))))..))))))..)))))))). ( -44.10)
>DroYak_CAF1 2708 89 - 1
UGCU------GGUGGGCGGCAGGAGCAGCUUGCGCUCGCUGCUCAGCUGGCCGAGGCUGCUGGAGUCCGCGAGGUCGAGGCUGGAGCUGCUGCUG
....------....(((((((((((((((........)))))))..(..(((..((((..(((...)))...))))..)))..)..)))))))). ( -42.50)
>DroAna_CAF1 168 95 - 1
UGCUGCCACUAGUGGGGGGCAGGAGCAGCUUCCGCUCGCUGCUCAUCUGGCCGAGGCUGCUGCAAUCCGCCAGGUCGAGGCUGGAGCUGCUGCUA
.(((.((.(....))).)))((.(((((((((.((......((((((((((.((.((....))..)).))))))).))))).))))))))).)). ( -43.50)
>consensus
UGCUGCUGGUGGUGGGCGGCAGGAGCAGCUUGCGCUCGCUGCUCAGCUGGCCGAGACUGCUGGAGUCCGCGAGGUCGAGGCUGGAGCUGCUGCUG
.((((....)))).(((((((((((((((........)))))))..((((((..((((((........))..))))..))))))..)))))))). (-42.25 = -41.92 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:39 2006