Locus 6247

Sequence ID 2R_DroMel_CAF1
Location 19,618,782 – 19,618,902
Length 120
Max. P 0.709502
window10001

overview

Window 1

Location 19,618,782 – 19,618,902
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 90.94
Mean single sequence MFE -47.40
Consensus MFE -40.53
Energy contribution -40.87
Covariance contribution 0.34
Combinations/Pair 1.13
Mean z-score -1.71
Structure conservation index 0.86
SVM decision value 0.37
SVM RNA-class probability 0.709502
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19618782 120 + 20766785
GUAGAGCUUGCGCUGAAAGGCGGUCAUUUUGACCAGGAUGACAUACUCGUACUUCUGAGGCAGCGUCAGCUGCAGCACAGUGUGCGAUCGCCGCUGAACGAAUCCCAGCAGCAGGGAGUG
.....((((.((((....((((((((((((....))))))))....((((((..(((..(((((....)))))....))).)))))).))))((((.........))))))).).)))). ( -46.80)
>DroSec_CAF1 2015 120 + 1
GUAGAGCUUGCGCUGAAAGGCGGUCAUUUUGACCAGGAUGACGUACUCGUACUUCUGCGGCAGCGUCAGCUGCAGCACAGUGUGCGAUCGCCGCUGAACGAAACCCAGCAGCAGGGAGUG
.....((((.((((....((((((((((((....))))))))....((((((...(((.(((((....))))).)))....)))))).))))((((.........))))))).).)))). ( -48.10)
>DroSim_CAF1 2072 120 + 1
GUAGAGCUUGCGCUGAAAGGCGGUCAUUUUGACCAGGAUGACGUACUCGUACUUCUGCGGCAGCGUCAGCUGCAGCACAGUGUGGGAUCGCCGCUGAACGAAUCCCAGCAGCAGGGAGUG
.....((((.((((....((((((((((((....))))))))...((((((((..(((.(((((....))))).))).))))))))..))))((((.........))))))).).)))). ( -47.30)
>DroEre_CAF1 2247 120 + 1
GUAGAGCUUGCGCUGAAAGGCGGUCAUUUUGGCCAGGAUGACGUACUCGUACUUCUGAGGCAGCGUCAGCUGCAGCACAGUGUGCGAUCGCCGCUGAACGAAUCCCAACAGCAGGGAGUG
......((((((((....)))((((.....)))).((((..(((.((((......))))(((((....)))))....(((((.((....))))))).))).)))).....)))))..... ( -43.80)
>DroYak_CAF1 2079 120 + 1
GUAGAGCUUGCGUUGGAAGGCGGUCAUUUUGACCAGGAUGACGUACUCGUACUUCUGAGGCAGCGUCAGCUGCAGCACAGUGUGCGAUCGCCGCUGAACGAAGCCCAGCAGCAGGGAGUG
......((((((((((..((((((((((((....))))))))....((((((..(((..(((((....)))))....))).)))))).))))(((......)))))))).)))))..... ( -50.90)
>DroAna_CAF1 2077 120 + 1
GUACAGCUUUCGCUGGAAGGCCGUCAUGCGAACCAAAAUGACGUACUCGUACUUUUGGGGCAGAGUGCUCUGCAGAACGGUGUGCGAACGUCGCUGCACAAAUCCCAGGAGCAGCGAGUG
.....((((((....))))))((((((..........))))))(((((((.(((((((((((((....)))))......(((((((.....))).))))....))))))))..))))))) ( -47.50)
>consensus
GUAGAGCUUGCGCUGAAAGGCGGUCAUUUUGACCAGGAUGACGUACUCGUACUUCUGAGGCAGCGUCAGCUGCAGCACAGUGUGCGAUCGCCGCUGAACGAAUCCCAGCAGCAGGGAGUG
.....((((.((((....((((((((((((....))))))))....((((((..(((..(((((....)))))....))).)))))).))))((((.........))))))).).)))). (-40.53 = -40.87 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:34 2006