Locus 6243

Sequence ID 2R_DroMel_CAF1
Location 19,606,958 – 19,607,067
Length 109
Max. P 0.648502
window9997

overview

Window 7

Location 19,606,958 – 19,607,067
Length 109
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 87.69
Mean single sequence MFE -19.55
Consensus MFE -16.26
Energy contribution -16.15
Covariance contribution -0.11
Combinations/Pair 1.28
Mean z-score -1.85
Structure conservation index 0.83
SVM decision value 0.24
SVM RNA-class probability 0.648502
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19606958 109 - 20766785
UCCCAUUUUAUGUACGUAUCCACUUUACAGAAACUAUCUGCU------GCAUACACACAUAUCCAGAUACAUAUGCGAGCCAGUACGCUCGUAUGUACAUACGUUUAUCAAUUCG
........((((((((((((.......((((.....)))).(------(.(((......))).)))))))..((((((((......))))))))))))))).............. ( -24.40)
>DroSec_CAF1 5582 109 - 1
UCCCAUUUUAUGUACGUAUCCACUUUACACAAACUAUCUGCU------GCAUACACACAUAUCCAGAUACAUAUGCGAACCAGUACGCUCGUAUGUACAUACGUUUAUUAAUUCG
........(((((((((((...............((((((..------...............)))))).....(((........)))..))))))))))).............. ( -16.43)
>DroSim_CAF1 5441 109 - 1
UCCCAUUUUAUGUACGUAUCCACUUUACACAAACUAUCUGCU------GCAUACACACAUAUCCAGAUACAUAUGCGAGCCAGUACGCUCGUAUGUACAUACGUUUAUUAAUUCG
........((((((((((.......)))......((((((..------...............))))))...((((((((......))))))))))))))).............. ( -21.33)
>DroEre_CAF1 5704 109 - 1
UCCCAUUUUAUGUACGUAUCCACUUUACAAAAACUAUCUGCU------GCAUACACACAUAUCCAGAUACAUAUGCGAGUCAGUACGCUCGUAUGUACAUACGUUUAUUAUUUCG
........((((((((((.......)))......((((((..------...............))))))...((((((((......))))))))))))))).............. ( -19.63)
>DroYak_CAF1 5604 109 - 1
UCCCAUUUUAUGUACGUAUCCACUUUACAAAAACUAUCUGCU------GCAUACACACAUAUCCAGAUACAUAUGCGAGCCAGUACGCUCGUGUGUACAUACGUUUAUUAUUUCG
........((((((((((.......)))......((((((..------...............))))))...((((((((......))))))))))))))).............. ( -20.33)
>DroAna_CAF1 5355 107 - 1
----UUUUUAUAUUCGUAUCCGCUUAGCA-AAACUAUUCACUACCACAGCAUACACAU-UAUUUAGAUACAUAUGCAGGCGAGUAUGCUAAUAUGUACAUACAUUUGU--AUUCG
----....(((((((((....(..(((..-...)))..).........(((((...((-(.....)))...)))))..))))))))).......(((((......)))--))... ( -15.20)
>consensus
UCCCAUUUUAUGUACGUAUCCACUUUACAAAAACUAUCUGCU______GCAUACACACAUAUCCAGAUACAUAUGCGAGCCAGUACGCUCGUAUGUACAUACGUUUAUUAAUUCG
.........(((.((((((...............((((((.......................)))))).((((((((((......))))))))))..)))))).)))....... (-16.26 = -16.15 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:30 2006