Locus 6240

Sequence ID 2R_DroMel_CAF1
Location 19,603,266 – 19,603,374
Length 108
Max. P 0.968652
window9994

overview

Window 4

Location 19,603,266 – 19,603,374
Length 108
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.10
Mean single sequence MFE -42.15
Consensus MFE -21.86
Energy contribution -22.83
Covariance contribution 0.98
Combinations/Pair 1.39
Mean z-score -2.72
Structure conservation index 0.52
SVM decision value 1.63
SVM RNA-class probability 0.968652
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19603266 108 + 20766785
AGUGGCAUAGUUG------------UCUCCACACUCGAGGAGCCCUUCCGCAGCUCCAUCUGCAGCUGCCUGCAGCAGUCCUCCGCAUGCUCCCGCAGCUUCUUUUCUUUGGCAGCCUCG
.((((((....))------------...))))...(((((.(((.....((((......))))((((((..(((((........)).)))....))))))..........)))..))))) ( -33.50)
>DroPse_CAF1 1926 108 + 1
AUCGGUAGAGUCG------------UCUCCACACUGGAGUUGCACUUGCGCAGCUCCAGCUGCAGCUGUCUGCAGCACUCUUCGGCGUGCUCGCGCAGCUUUUUCUCCUUGGAGGCUUCU
........((..(------------((((((((((((((((((......)))))))))).)).((((((..(((((((.(....).))))).)))))))).........)))))))..)) ( -48.70)
>DroEre_CAF1 1941 108 + 1
AGUGGCAUAGUUG------------UCUCCACACUCGAGGAGCCCUUCCGCAGCUCCAUCUGCAGCUGCCUGCAGCAAUCCUCUGCGUGCUCCCGCAGCUUCUUUUCUUUGGCGGCCUCG
.((((((....))------------...))))...(((((.(((.....((((......))))((((((..((((((......))).)))....))))))..........)))..))))) ( -36.50)
>DroWil_CAF1 1902 120 + 1
AGAGGCAUUGUUGUUGUCGUUACGGUCUCCAAAUUCGAUGACGAUUUGCGCAGCUCCAUUUGCAGUUGCCGGCAACAUUCUUCGGCACGUUCGCGUAGCUUUUUCUCCUUCGAUGCCUCA
.(((((((((.((((((((((((((.........))).)))).....(.((((((.(....).))))))))))))))......((((((....))).)))..........))))))))). ( -39.50)
>DroAna_CAF1 1903 108 + 1
AGCGGCAUGGUAG------------UCUCCAGACUGGAGGAGCCCUUCCGCAGCUCCUGCUGCAGUUGCCGGCAGCACUCUUCGGCGUGUUCCCGCAGCUUUUUCUCCUUGGAUGCCUCG
.(.(((((..(((------------((....)))))((((((.......(((((....)))))((((((.((.(((((.(....).))))))).))))))....))))))..))))).). ( -47.90)
>DroPer_CAF1 1931 108 + 1
AUCGGUAGAGUCG------------UCUCCACACUGGAGUUGCACUUGCGCAGCUCCAGCUGCAGCUGUCUGCAGCACUCUUCGGCGUGCUCCCGCAGCUUUUUCUCCUUGGAGGCUUCG
.......(((..(------------((((((((((((((((((......)))))))))).)).((((((..(.(((((.(....).))))))..)))))).........)))))))))). ( -46.80)
>consensus
AGCGGCAUAGUUG____________UCUCCACACUCGAGGAGCACUUCCGCAGCUCCAGCUGCAGCUGCCUGCAGCACUCUUCGGCGUGCUCCCGCAGCUUUUUCUCCUUGGAGGCCUCG
...(((....................(((.......)))..........((((......))))((((((..(.(((((.(....).))))))..))))))..............)))... (-21.86 = -22.83 +   0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:27 2006