| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,594,120 – 19,594,216 |
| Length | 96 |
| Max. P | 0.724152 |
| Location | 19,594,120 – 19,594,216 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 90.45 |
| Mean single sequence MFE | -22.95 |
| Consensus MFE | -19.46 |
| Energy contribution | -18.52 |
| Covariance contribution | -0.94 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.724152 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19594120 96 - 20766785 AUGUGAAAUGCGAACGCACACGCGGGUAUCGAUAGAGACACAGAUAUCGAUAUCGAUGUUGGAGUGUAAUUUAUAUUACAAAGUGAAAGUAUUGAA ......(((((...(((....))).(((...(((((.((((.(((((((....)))))))...))))..)))))..))).........)))))... ( -21.50) >DroSec_CAF1 3057 96 - 1 AUGUGAAAUGCGGACACACACGCUGGUAUCGAUAGAGGCCAAGAUAUCGAUAUUGAUGUUGGAGUGUGAUUUAUAUUGCAAAGUGAAAGCCUUUAA ...((.((((..((..(((((.((..((((((((..((........))..))))))))..)).))))).))..)))).))..((....))...... ( -21.70) >DroSim_CAF1 3400 96 - 1 AUGUGAAAUGCGGACACACACGCUGGUAUCGAUAGAGGCCAAGAUAUCGAUAUUGAUGUUGGAGUGUGAUUUAUAUUGCAAAGUGAAAGUCUUUAA ...........((((.(((((.((..((((((((..((........))..))))))))..)).))))).(((((........))))).)))).... ( -23.40) >DroYak_CAF1 3077 96 - 1 AUGUGAAAUGCGGACGCACACGCGGGUAUCGAUAGAAGCCAAGCUAUCGAUAUCGAUGGUAGAGUGUGAUUUAUAUUGCAAAGUGAAAGUUUUAAA .((..(..(((....)))(((((.(((.((....)).)))..(((((((....)))))))...))))).......)..))................ ( -25.20) >consensus AUGUGAAAUGCGGACACACACGCGGGUAUCGAUAGAGGCCAAGAUAUCGAUAUCGAUGUUGGAGUGUGAUUUAUAUUGCAAAGUGAAAGUCUUUAA .(((..((((..(((((((....((((.((....)).)))).(((((((....)))))))...))))).))..)))))))................ (-19.46 = -18.52 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:25 2006