Locus 621

Sequence ID 2R_DroMel_CAF1
Location 3,142,762 – 3,142,857
Length 95
Max. P 0.500000
window1112

overview

Window 2

Location 3,142,762 – 3,142,857
Length 95
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 85.85
Mean single sequence MFE -25.72
Consensus MFE -18.52
Energy contribution -18.96
Covariance contribution 0.44
Combinations/Pair 1.23
Mean z-score -1.56
Structure conservation index 0.72
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3142762 95 - 20766785
UUAAGAUGCCAUUGAAAAGGUGACGAAAGGCCAACAAUUGAGGGGCGUUGUUAGCCAU-GGCCAAUUGUUAUUGCCAAUUUGUGACGCUUUUUAAG
...........((((((((((.(((((.(((.((((((((...(((.......)))..-...))))))))...)))..))))).)).)))))))). ( -27.60)
>DroSec_CAF1 32575 94 - 1
UUAAGAUGCCAUUGAAAAGGUGACGAAAGGCCAACAAUUGUG-GGCGUUGUUAGCCAU-GGCCAGUUGUUAUUGCCAAUUUGUGACGCUUUUUAAG
...........((((((((((.(((((.(((.((((((((..-(((.......)))..-...))))))))...)))..))))).)).)))))))). ( -27.20)
>DroEre_CAF1 32368 95 - 1
UUAAGUUUCCAUUGAAAAGGUGACGAAAGAAGAACAAUUGAGGGGCGUUCUUAGUCAU-GGCCAAUUGUUACUGCCAAUUUGUGACGCUUUUUAAG
...........((((((((((.(((((...((((((((((...(((.......)))..-...)))))))).)).....))))).)).)))))))). ( -21.90)
>DroYak_CAF1 32997 95 - 1
UUAAGUUGCCAUUGAAAAGGCGACGAAGGGAGAACAAAUGAGGGGCGUUGUUAGUCAU-GGCCAAUUGUUAUUGCCAAUUUGUGACGCUUUUUAAG
....((((((........))))))..............((((((((((..(.(((..(-(((.(((....)))))))))).)..)))))))))).. ( -27.30)
>DroAna_CAF1 31730 94 - 1
UUAAGCCGCCAUUGAGUA-GUGACGAAAGGCAAACAAUCGAUUGG-GUUGUUAGCUUCGGGCUAAUUGUUAUUGUCGAUUCGUGACGCUUUUUAAC
..(((((((.(((((.((-(((((((..(((.(((((((.....)-))))))..(....))))..))))))))))))))..)))..))))...... ( -24.60)
>consensus
UUAAGAUGCCAUUGAAAAGGUGACGAAAGGCCAACAAUUGAGGGGCGUUGUUAGCCAU_GGCCAAUUGUUAUUGCCAAUUUGUGACGCUUUUUAAG
...........((((((((((.(((((.(((.((((((........)))))).)))...(((.(((....))))))..))))).)).)))))))). (-18.52 = -18.96 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:59 2006